BtaINT0034629 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37932100-37932680:+
Coord C1 exon
chr29:37932100-37932240
Coord A exon
chr29:37932241-37932584
Coord C2 exon
chr29:37932585-37932680
Length
344 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
CTCTGCCTCCCCTCCCTCAGCCC
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACTCTTCTGTGATTGTGAAAACGAAGGACTGGGAATCTCGAGAGCTAATGCTCCTCATCCCCTGCATCGTTCTGGGAATTCTCCTTCTCATCTCACTTGTTTTCATAGCCATCATCCTCTTGAGAATGAAAGGAAAATACG
Seq A exon
GTAGGTGCAGAGTCCTGGGAGCCACAGGAAATGCCCAGGGATGAAAACAAGCAGACCTGAGGTGCAGTCTTCCCAGGGGGACGTGAGCCATGGGGGTCACCAGCAGGAGTGAAGGTGATCCAGCAATGGCCATCCAGCCCTGGTCCCAAGAAGCACCTCCTGATGGGAAGGATTTTCCCAGCATGCCCTTCAGAAGTGGTCCACGGGAGGACCACATTGTGTGTGTGTTTAGGGGCATATGGGGGCGGGGAAGGTGGGAGGGAAGCGTCTCTATCAGAAAAGAACCAGGAAGACTGGAAAGGCACACAAAGTGACTTGTAGAATCTCTGCCTCCCCTCCCTCAG
Seq C2 exon
CCCTCCCCGCTGTGGTAAACCACCAGCACTCACCCACCACCACCCCGGCAGGGATGGAAAACTATCAAGAGGTCCCCATCACCATTGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367:ENSBTAT00000047026:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF151021=TMEM154=FE(51.1=100)
A:
NA
C2:
PF151021=TMEM154=PD(25.0=69.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGATTGTGAAAACGAAGGACT
R:
TCTTTGGCAATGGTGATGGGG
Band lengths:
230-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]