MmuEX6031555 @ mm9
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10868632-10870878:-
Coord C1 exon
chr19:10870816-10870878
Coord A exon
chr19:10869054-10869194
Coord C2 exon
chr19:10868632-10868727
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTGGACTTTCTGTTTCCAGAAT
3' ss Score
7.95
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG
Seq A exon
AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG
Seq C2 exon
CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
PF054546=DAG1=FE(18.1=100)
A:
PF054546=DAG1=PD(59.2=93.8)
C2:
PF054546=DAG1=PD(16.4=57.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAGAGACATCTCAATCTG
R:
TTGGCAATGGTGATAGGGACA
Band lengths:
154-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: