RnoEX0018727 @ rn6
Exon Skipping
Gene
ENSRNOG00000020884 | Cd6
Description
Cd6 molecule [Source:RGD Symbol;Acc:2312]
Coordinates
chr1:226851934-226855709:-
Coord C1 exon
chr1:226855647-226855709
Coord A exon
chr1:226853842-226853982
Coord C2 exon
chr1:226851934-226852050
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTGAACTTCCTGTTTCCAGAAT
3' ss Score
6.37
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCTCCCAGAGACATCCCAATCTGTCGACTTCTGAAGTGCCTTCCAGAGTTCCGGTCACCATAG
Seq A exon
AATCTTCTGTGCCTGTGAGCGTGAAGGATAAGGACTCTCAAAATTTGACACTTCTCATTCCCTGCATTGTCCTGGGAATTCTCCTTCTTGTCTCCCTCATCTTCATAGTTTTTCTTCTCTTGAAAGCCAAAGGACAATATG
Seq C2 exon
CTCCTATGTTGTTCATCAAGCCCCGGGTCCCCGAGGACTCGGACTCCAGTTCTGAATCCGACTATGAGCATTATGACTTCAGCTCCCAGCCGCCTGTGGCCCTGACCACCTTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020884_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.575
Domain overlap (PFAM):
C1:
PF054546=DAG1=FE(13.6=100),PF151021=TMEM154=FE(21.0=100)
A:
PF054546=DAG1=FE(30.5=100),PF151021=TMEM154=FE(47.0=100)
C2:
PF054546=DAG1=PD(15.6=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAGAGACATCCCAATC
R:
GTAGAAGGTGGTCAGGGCCA
Band lengths:
179-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]