BtaEX6102530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37929431-37932680:+
Coord C1 exon
chr29:37929431-37929496
Coord A exon
chr29:37932100-37932240
Coord C2 exon
chr29:37932585-37932680
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGGGGTTCTTTCTTCCAGACT
3' ss Score
8.45
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTGCCCGGAGTCTGCTCAATCTGTCCATTACTGAAGTCCCTGCAAGTGGTCAGCCGGTCACTGTGG
Seq A exon
ACTCTTCTGTGATTGTGAAAACGAAGGACTGGGAATCTCGAGAGCTAATGCTCCTCATCCCCTGCATCGTTCTGGGAATTCTCCTTCTCATCTCACTTGTTTTCATAGCCATCATCCTCTTGAGAATGAAAGGAAAATACG
Seq C2 exon
CCCTCCCCGCTGTGGTAAACCACCAGCACTCACCCACCACCACCCCGGCAGGGATGGAAAACTATCAAGAGGTCCCCATCACCATTGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.515
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PU(22.8=91.3)
A:
PF151021=TMEM154=FE(51.1=100)
C2:
PF151021=TMEM154=PD(25.0=69.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCGGAGTCTGCTCAAT
R:
CTTCTTTGGCAATGGTGATGGG
Band lengths:
162-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]