BtaINT0034914 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51862240-51863562:-
Coord C1 exon
chr13:51863144-51863562
Coord A exon
chr13:51862347-51863143
Coord C2 exon
chr13:51862240-51862346
Length
797 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGTCCCTGCTCCCTTCCCAGCGA
3' ss Score
7.5
Exon sequences
Seq C1 exon
GGTGGCAGCCTCTGCTAGAGGCTTCCTGGGCTGGTAGCCTGTCCCCGTGTCCCTCCTCCCTTCCCCACCCTCCCCACTTCCCTCTCCTCTCTCGCTCCTGCCCCTTTGCTCTTCCTCCCTCCCTTCCCTTCCACCCCGGGCCGGCTCCCTACCTCGTCCAGGCCAGCTGTGCCCGGCGTCTGTTGGTCGCCCTACGCCAGGCCCGCCCGCCCCACCGCGATGGAGCTGCCCCAGCCGGAGTCCGTGGCAGGCTCGGCTCTCAGTCCGGCCGGCATGCGCGGTGGCGCCCAGCGTCCTGGCCACCTCCCGGGCCTCGGGCTGGGGGCTCATGGCCTCCTGGGGTCCCCGGAGCGCGCGGCCGCTTCCTCTCCGGTCACCACCCTCACCCAGACTATGCACCACCTCGCTGGGCTCGGCAG
Seq A exon
GTAGGGGGCCCCAGGGATGCTCGGTGTAGGGTGGGAGGCCCGCACTAGGTTTTGGTCCCAGGCCTCTCTGGAACCCGGCATGGGTGCCAAACGGAGAGGCATCCCAGACACAGCCTGCTTCAAGGCTCAGGACCGAGCTGTGCTGCTCACACCCTCCAGGTGACTTGTTCTTGGCTGCCACATTCTCTGGAGACCCTCTTCCCCACCTCCACCATGCTGCCTCCCTAATCTTGGCTCAAATCTCCACCATTTTGCCCCAGGCAGGGGATCCTGAGCCTGGACGGGGAATTTGAGGGTGGTCCTGTTCCCTCTACCCTCAGTTCTTTCCTGGGGTAAAGGGGTTAAACACTGGTCCTGTTCCCTGAGCAAGTTTGCAGCTCCAGGCTGGGTTGTCCTTGAAGCAATAAAGGCCAAAGGCTTGGCCATTCCTCCAGAAAGGCTTGTGGGTGGGTAGGGACCTTTAGAGTTTAGGGGATGGCCCTCTAGGGCTGTCTGCTGCCCCACCATTCCTCAGGATGGTTCCAGCCCAACTCCTTGCTCTTGCTCTGGGTTCACCTTCCCTGCACCCAGGAGAACCTTTAATCAATCAACAAAGAGAAGACATTAGGGCTTCTGTAGAAGGCCTGAGAAGAGGGTAGATCCTTGATGCCATCACCTCCTTGAGACAGTGCAGTGACTGGAAGGGCACTTCAGAGGTTGGGGGGAGTGGGTGGTGGTGTTGGTGGGAACATGGGCCAGCCAACCCTTGAGCCCCACATTTACCTTTCTCCTTCCCTGGGTCCCTGCTCCCTTCCCAG
Seq C2 exon
CGAGACCCCAAAGAGTCAGGTAGGCAGCCTGCTCACATGCCTATCCCTGTCCCGTCGGGCGTCTGAATCCTCCCTGTCGTCTGAGTCCTCTGAATCTTCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436:ENSBTAT00000011100:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTCTTCCTCCCTCCCTTC
R:
AGGCTGCCTACCTGACTCTTT
Band lengths:
344-1141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development