DreINT0043702 @ danRer10
Intron Retention
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14797334-14798244:-
Coord C1 exon
chr13:14797643-14798244
Coord A exon
chr13:14797417-14797642
Coord C2 exon
chr13:14797334-14797416
Length
226 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GTTTTCTCGTTTTGATGCAGTCA
3' ss Score
6.6
Exon sequences
Seq C1 exon
ATCAGATGTAACGACGCTGCTCATTGGCTACTTACATTGCCGCTTGCGGACTGCATGTTTTGAACATAAATAAGAGCTACATTCAGCACTTCCTCAGCAGAGTTTGGATAAGGTCAGAGAGAGTGCGATTGAATCGGCAGCTCTCTGACAACAAAGAAGATGGATTTTTAACCCCCTGACTCTTTATTTTTGTTTAGATTTGTGTAATCGGCCGTCGTTATTATGCAGATTCTCCAAGTTGTAGCTAAACTAAACCCTAAAAAGCTTTAGCCCCGATCGGGTCGCTGTGCGATTACTAGCTCGGTTTAACCCCTTGTGTTCTTAATCGCGCCTGGCTGATTATTATTTTAACAACCATCTGACGATCCACGATCTTCTTCAAAAATGGATATTGATATGGTTCCAGGCGACGTTAGCCCTGTTTATGATCCATTCAGCACTGGGCCCGAATCAGCCCTCGGAGCTCCCCGCTTCACTCTGCCGGAGCTCGGTGCTCGGGGCTCCCCCTGCATGAAGAGCCTGGCCTCTCCCGGGCCCATGGCGGTGCTGTCTCCTGTCACCAACCTGGCCCTCAACATGAATAATCTCGCTGTTCTTGGAGG
Seq A exon
GTGAGTGGAGCTGGGCTGTTTTTTTCAAGATTGGAAAAATAAATAAAACAACTGCATCGCTGCAGAAATACTTCCTGGAACAGTTTGCAGGCTGTTTACATTAATGACGCTAACGTACCTTATCTATTTGTGTAACTTGGTGCTTTAACGTTATATGAGGCGAAAACAAACATGATGCAATTCATTTTCGTTTCGCTAAAAAGTTTGTTTTCTCGTTTTGATGCAG
Seq C2 exon
TCAATGTGAAACTCCAAAGCGGAAGAAAAATTTGCCCCTCCTGAAGATTCCTTCCTTCGCCTCTGATGCCTCTTCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792:ENSDART00000020576:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCATCTGACGATCCACGA
R:
AGGAATCTTCAGGAGGGGCAA
Band lengths:
303-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]