BtaINT0034924 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51858650-51859097:-
Coord C1 exon
chr13:51858975-51859097
Coord A exon
chr13:51858785-51858974
Coord C2 exon
chr13:51858650-51858784
Length
190 bp
Sequences
Splice sites
5' ss Seq
ATGGTATAC
5' ss Score
2.73
3' ss Seq
TCTGTTTGTCACCCATGCAGTGT
3' ss Score
6.95
Exon sequences
Seq C1 exon
GATGGATTTGTCTTCAAGATGCCAGGGAAACTCAAACATCCCAGCCACTCCCGTGCTCTTGGGGAGTGGGCCAGCCGCAGAGAAGCCTTTGCCCAGAGGCCAAGCTCGGCTCCCGACCTGATG
Seq A exon
GTATACCAGGAGAGCTGACCCCTGCAGGGCAGGCATGCGCGGAGGGCAGGTGCCTGTGAAGGCAGCCTGGGAAACTTGGGGGTGATCCTGAGCCCTGAGGCAGTGGGAACCTTATTTCTCAGAAAGTTAGGGTGGAGACTTGTCTCGGGCCCCATGTTGAGTCTCCTCTGTCTGTTTGTCACCCATGCAG
Seq C2 exon
TGTCTCACCCCTGAGCGGAAGATGGAAGTCGAGGAACTGATCCCCCTGGCCCGATGCCAGTTCTCCGTGACCCCCTCCACAGGGGCTGTTGAGGAAGACGATGGATTCGTGGATATCCTGGAGACGGACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436:ENSBTAT00000011100:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.8=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCAAGATGCCAGGGAA
R:
CCGTCTCCAGGATATCCACGA
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development