RnoINT0032517 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123736317-123737201:+
Coord C1 exon
chr3:123736317-123736439
Coord A exon
chr3:123736440-123737069
Coord C2 exon
chr3:123737070-123737201
Length
630 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAT
5' ss Score
4.52
3' ss Seq
TGTGCTTGCCATTTGGACAGTGT
3' ss Score
5.23
Exon sequences
Seq C1 exon
GATGGATATATCTTCAAGATGCCACAGAAGCTCCCTCATTCCAGCTCTGCCCGAGCTTTGGCAGAGTGGGCCAGCCGCAGAGAGGCCTTTACCCAGAGGCCCAGCTCAGCCCCTGACTTGATG
Seq A exon
GTACATAGGAGAATAGGGCCAAGGAACAGCTCTGGGGAAAGGTGGTGGCTGCAGACATGGCTCAGTGGTTAAAGGCACTGGTTGCTCTTCCAGAGGTTCAATTCCCAGCTCCCAACCCACCTCATGACCCTCTATAATTCCAGTCCCGGATGACCTAATACCCACTTCTGGCTTCTGTGGTCACTGGTTGCAAATGGCACACAGACATATGTGCAGGCAGAATACCCATACACATAAAATAAAGTTAAAAATTAAAAAAATACCTGGGTGTGGTTGTGTATGCCTTTAATCCCTTCACTTGGGAGGCAGAAACAAGGGAATTTCTGAGTTCAAGGCTAGCTTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAGAGTCAAATAAGTAAATATAAAAGCTATAAAATATTTTATTTATATATAAATATGTTTGTATATTTATAATATAAAAAATAAAAATATAAATAAATAAAAGCTAAAACACTTTTTAAAGAGACAGTAGGAGAAGACTCCTTCCCCACAAACCGCCTGGGTACTGCAGACTTTTCCTCAGAAGGAGTGACAGGTCCCCACCTGAGTGTTCTGTGCTTGCCATTTGGACAG
Seq C2 exon
TGTCTTACCACTGACGGGAAGATGGACGTGGAGGAGGCGAGCCCTGTGGCACAGTCTTCCTCCTTGACTCCTGTCGAAAGGGCTTGTGAAGAAGATGACGGATTTGTGGACATCCTAGAGAGTGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.659
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(14.9=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGATATATCTTCAAGATGCCACA
R:
TTTAAATCACTCTCTAGGATGTCCAC
Band lengths:
254-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]