RnoEX0018915 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123736115-123737201:+
Coord C1 exon
chr3:123736115-123736225
Coord A exon
chr3:123736317-123736439
Coord C2 exon
chr3:123737070-123737201
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTCCAATCTTGCCCACAGGAT
3' ss Score
10.41
5' ss Seq
ATGGTACAT
5' ss Score
4.52
Exon sequences
Seq C1 exon
GGACATAGTCCTGTGCTACAGAACATCACCAACTCCCAAGCACTGGACAGCTGGGAGAAAGATGAAGCAGGCTACAGAGCTGCCAGTAGTCCTGGGGAGGACAAAGAGAAC
Seq A exon
GATGGATATATCTTCAAGATGCCACAGAAGCTCCCTCATTCCAGCTCTGCCCGAGCTTTGGCAGAGTGGGCCAGCCGCAGAGAGGCCTTTACCCAGAGGCCCAGCTCAGCCCCTGACTTGATG
Seq C2 exon
TGTCTTACCACTGACGGGAAGATGGACGTGGAGGAGGCGAGCCCTGTGGCACAGTCTTCCTCCTTGACTCCTGTCGAAAGGGCTTGTGAAGAAGATGACGGATTTGTGGACATCCTAGAGAGTGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.659 C2=0.659
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(13.4=100)
A:
PF066178=M-inducer_phosp=FE(14.9=100)
C2:
PF066178=M-inducer_phosp=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTACAGAACATCACCAACT
R:
ATCACTCTCTAGGATGTCCACA
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]