BtaEX0008047 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51858650-51859324:-
Coord C1 exon
chr13:51859202-51859324
Coord A exon
chr13:51858975-51859097
Coord C2 exon
chr13:51858650-51858784
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGTATTGCCCACAGGAT
3' ss Score
11.01
5' ss Seq
ATGGTATAC
5' ss Score
2.73
Exon sequences
Seq C1 exon
GGGAGGCTTCTGGGCCACAGTCCTGTGCTACGGAACATCACCAACTCCCAAGCGTCTGGCACCTGGAGGAAGACTGAGGCGTGTGACCAAGCTGCCCACGGCTCTGGGGAGGACAAAGAGAAT
Seq A exon
GATGGATTTGTCTTCAAGATGCCAGGGAAACTCAAACATCCCAGCCACTCCCGTGCTCTTGGGGAGTGGGCCAGCCGCAGAGAAGCCTTTGCCCAGAGGCCAAGCTCGGCTCCCGACCTGATG
Seq C2 exon
TGTCTCACCCCTGAGCGGAAGATGGAAGTCGAGGAACTGATCCCCCTGGCCCGATGCCAGTTCTCCGTGACCCCCTCCACAGGGGCTGTTGAGGAAGACGATGGATTCGTGGATATCCTGGAGACGGACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.463 C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.8=100)
C2:
PF066178=M-inducer_phosp=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCTGTGCTACGGAACA
R:
CTTTAAGTCCGTCTCCAGGATATCC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development