HsaEX6077032 @ hg38
Exon Skipping
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr20:3798412-3805440:+
Coord C1 exon
chr20:3798412-3798449
Coord A exon
chr20:3800971-3801093
Coord C2 exon
chr20:3805259-3805440
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCATCTTGGCTGCAGGAT
3' ss Score
8.36
5' ss Seq
ATGGTACAT
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTCTCTGCATGGATTCCCCCAGCCCTATGGACCCCCAC
Seq A exon
GATGGATTTGTCTTCAAGATGCCATGGAAGCCCACACATCCCAGCTCCACCCATGCTCTGGCAGAGTGGGCCAGCCGCAGGGAAGCCTTTGCCCAGAGACCCAGCTCGGCCCCCGACCTGATG
Seq C2 exon
GGTTAACCCTTCATCTTCCTGTGTCCTGAAACGCTCCTTTGTGTGTGTGTCAGCTGAGGCTGGGGGAGAGCCGTGGTCCCTGAGGATGGGTCAGAGCTAAACTCCTTCCTGGCCTGAGAGTCAGCTCTCTGCCCTGTGTACTTCCCGGGCCAGGGCTGCCCCTAATCTCTGTAGGAACCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224_MULTIEX1-5/16=C1-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.736 C2=NA
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(33.3=77.8)
A:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.9=100)
C2:
NA
Main Skipping Isoform:
ENST00000245960fB1488
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCATGGATTCCCCCAG
R:
ACGGTTCCTACAGAGATTAGGGG
Band lengths:
218-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains