HsaEX6077032 @ hg19
Exon Skipping
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25 homolog B (S. pombe) [Source:HGNC Symbol;Acc:1726]
Coordinates
chr20:3781390-3782035:+
Coord C1 exon
chr20:3781390-3781512
Coord A exon
chr20:3781618-3781740
Coord C2 exon
chr20:3781901-3782035
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCATCTTGGCTGCAGGAT
3' ss Score
8.36
5' ss Seq
ATGGTACAT
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTGAGGCTGCTGGGCCACAGCCCCGTGCTTCGGAACATCACCAACTCCCAGGCGCCCGACGGCCGGAGGAAGAGCGAGGCGGGCAGTGGAGCTGCCAGCAGCTCTGGGGAAGACAAGGAGAAT
Seq A exon
GATGGATTTGTCTTCAAGATGCCATGGAAGCCCACACATCCCAGCTCCACCCATGCTCTGGCAGAGTGGGCCAGCCGCAGGGAAGCCTTTGCCCAGAGACCCAGCTCGGCCCCCGACCTGATG
Seq C2 exon
TGTCTCAGTCCTGACCGGAAGATGGAAGTGGAGGAGCTCAGCCCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGGGGATACTGAGGAAGATGATGGATTTGTGGACATCCTAGAGAGTGACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224-'7-12,'7-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.680 C2=0.663
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(14.7=100)
A:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.9=100)
C2:
PF066178=M-inducer_phosp=FE(25.6=100),PF066178=M-inducer_phosp=PU(1.3=2.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTTCGGAACATCACCAA
R:
TTTAAGTCACTCTCTAGGATGTCCAC
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)