MmuEX0010356 @ mm9
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131017332-131018424:+
Coord C1 exon
chr2:131017332-131017502
Coord A exon
chr2:131017549-131017671
Coord C2 exon
chr2:131018293-131018424
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTCCAATCTTGCCCACAGGAT
3' ss Score
10.41
5' ss Seq
ATGGTACAT
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTGAGGCTGCTGGAACACAGTCCGGTGCTGCAGAGCATCACCAACTCCCGAGCACTGGACAGCTGGAGGAAAACTGAAGCAGGCTACCGAGCCGCCGCCAATAGTCCTGGGGAGGACAAAGAGAATGTGCGCTTCCAGAGACCAAGATGGAGGAGCTCCAGGGAGAGAAGG
Seq A exon
GATGGATATATCTTCAAGATGCCACAGGAGCTCCCTCATTCCAGCTCTGCCCAAGCTTTGGCAGAATGGGTCAGCCGCAGACAGGCCTTTACCCAGAGGCCCAGCTCAGCCCCTGACTTGATG
Seq C2 exon
TGTCTTACCACTGAGTGGAAGATGGAAGTAGAGGAGCTGAGCCCGGTGGCACAGTCTTCTTCCTTGACTCCTGTCGAAAGGGCTTCTGAAGAAGATGACGGATTTGTGGACATCCTGGAGAGTGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.366 C2=0.523
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(15.2=100)
A:
PF066178=M-inducer_phosp=FE(14.8=100)
C2:
PF066178=M-inducer_phosp=FE(15.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCATCACCAACTCCCGAG
R:
CCAGGATGTCCACAAATCCGT
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: