RnoINT0032529 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123736115-123736439:+
Coord C1 exon
chr3:123736115-123736225
Coord A exon
chr3:123736226-123736316
Coord C2 exon
chr3:123736317-123736439
Length
91 bp
Sequences
Splice sites
5' ss Seq
AACGTGCGC
5' ss Score
4.53
3' ss Seq
CTCTCCAATCTTGCCCACAGGAT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GGACATAGTCCTGTGCTACAGAACATCACCAACTCCCAAGCACTGGACAGCTGGGAGAAAGATGAAGCAGGCTACAGAGCTGCCAGTAGTCCTGGGGAGGACAAAGAGAAC
Seq A exon
GTGCGCTTCCAGAGACCGGGATGGAGGATCTCCAGGGAGAGAAGGGTACACTGGGTTTGTCCTGATAGCTCCTCTCCAATCTTGCCCACAG
Seq C2 exon
GATGGATATATCTTCAAGATGCCACAGAAGCTCCCTCATTCCAGCTCTGCCCGAGCTTTGGCAGAGTGGGCCAGCCGCAGAGAGGCCTTTACCCAGAGGCCCAGCTCAGCCCCTGACTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=NA C2=0.659
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(13.4=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACAGCTGGGAGAAAGA
R:
CCTCTGGGTAAAGGCCTCTCT
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]