BtaINT0034923 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51858975-51859614:-
Coord C1 exon
chr13:51859578-51859614
Coord A exon
chr13:51859098-51859577
Coord C2 exon
chr13:51858975-51859097
Length
480 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCCCTCTGTATTGCCCACAGGAT
3' ss Score
11.01
Exon sequences
Seq C1 exon
TGAGCAGTTTGCCATCCGACGTTTCCAGTCCTTGCCG
Seq A exon
GTGAGTGTCCTCTGAGGCCCATTGAGAGACTTGGGCCTACTGGCTAGGATTATAGAGGGCAGGAGGGACCTGGATTGATTCTCGGAAGGTCGACTTGAAGCAGTTGGGTGTCCCTTGTCTGGCTATGGGAGATGGGGCTTTGGAGGTGGACAGGGGATCTGGGGGAGTTGGAGCAGAGATGGGAGAAGGTATGGCCTGGGCTGGCACTAGGGGAATGGAGCCTTCTGTACCTACTGCCCTCCTGGCTCTCTAGGGGAGGCTTCTGGGCCACAGTCCTGTGCTACGGAACATCACCAACTCCCAAGCGTCTGGCACCTGGAGGAAGACTGAGGCGTGTGACCAAGCTGCCCACGGCTCTGGGGAGGACAAAGAGAATGTATGTTTCCAGAAGGCCAGAATCGAAGCACTTCAGGGAGAGAGGGGGGCTTGCTGGAGCGGTTTTCTGGCATTTGATCATGCATCCCTCTGTATTGCCCACAG
Seq C2 exon
GATGGATTTGTCTTCAAGATGCCAGGGAAACTCAAACATCCCAGCCACTCCCGTGCTCTTGGGGAGTGGGCCAGCCGCAGAGAAGCCTTTGCCCAGAGGCCAAGCTCGGCTCCCGACCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436:ENSBTAT00000011100:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(28.6=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
A:
NA
C2:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development