HsaINT0031560 @ hg19
Intron Retention
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25 homolog B (S. pombe) [Source:HGNC Symbol;Acc:1726]
Coordinates
chr20:3781109-3781740:+
Coord C1 exon
chr20:3781109-3781145
Coord A exon
chr20:3781146-3781617
Coord C2 exon
chr20:3781618-3781740
Length
472 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTCTCCCATCTTGGCTGCAGGAT
3' ss Score
8.36
Exon sequences
Seq C1 exon
CGAGCAGTTTGCCATCAGACGCTTCCAGTCTATGCCG
Seq A exon
GTGAGTGTCTTCGAGGCCTGACTGAGGCTTAGGCATGCTAGCCAGGCATGGGGTAGATGAGCAGGATGCATTCAGGGATCACCTCCCAGCTGGGTGTCCCCAGGCAGGCTGTAGGAGATGGGGTTTCAGAGGTAGGTAGGTAAGTGGGAGGAGCTGGAGGAGAGGTGGAGAAGGTAGGGCCTGGGCTCGTGCCGGAGGAATGCAGCCTTCATTCCTCTGCCTGCCGCCCTGCCTGGCTCTCTAGGTGAGGCTGCTGGGCCACAGCCCCGTGCTTCGGAACATCACCAACTCCCAGGCGCCCGACGGCCGGAGGAAGAGCGAGGCGGGCAGTGGAGCTGCCAGCAGCTCTGGGGAAGACAAGGAGAATGTGCGCTTCTGGAAGGCCGGGGTGGGAGCTCTCCGGGAAGAGGAGGGGGCATGCTGGGGTGGTTCCCTGGCATGTGAGGACCCTCCTCTCCCATCTTGGCTGCAG
Seq C2 exon
GATGGATTTGTCTTCAAGATGCCATGGAAGCCCACACATCCCAGCTCCACCCATGCTCTGGCAGAGTGGGCCAGCCGCAGGGAAGCCTTTGCCCAGAGACCCAGCTCGGCCCCCGACCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224-CDC25B:NM_021872:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.680
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(28.6=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
A:
NA
C2:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)