MmuINT1006549 @ mm10
Intron Retention
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25B [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131191596-131191935:+
Coord C1 exon
chr2:131191596-131191721
Coord A exon
chr2:131191722-131191812
Coord C2 exon
chr2:131191813-131191935
Length
91 bp
Sequences
Splice sites
5' ss Seq
AATGTGCGC
5' ss Score
2.86
3' ss Seq
CTCTCCAATCTTGCCCACAGGAT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTGAGGCTGCTGGAACACAGTCCGGTGCTGCAGAGCATCACCAACTCCCGAGCACTGGACAGCTGGAGGAAAACTGAAGCAGGCTACCGAGCCGCCGCCAATAGTCCTGGGGAGGACAAAGAGAAT
Seq A exon
GTGCGCTTCCAGAGACCAAGATGGAGGAGCTCCAGGGAGAGAAGGGTACACTCGGTTTATCCTGATAGTTCCTCTCCAATCTTGCCCACAG
Seq C2 exon
GATGGATATATCTTCAAGATGCCACAGGAGCTCCCTCATTCCAGCTCTGCCCAAGCTTTGGCAGAATGGGTCAGCCGCAGACAGGCCTTTACCCAGAGGCCCAGCTCAGCCCCTGACTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330:ENSMUST00000028804:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.366
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(15.2=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(14.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCATCACCAACTCC
R:
CTGACCCATTCTGCCAAAGCT
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types