HsaINT0031555 @ hg38
Intron Retention
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr20:3800743-3801093:+
Coord C1 exon
chr20:3800743-3800865
Coord A exon
chr20:3800866-3800970
Coord C2 exon
chr20:3800971-3801093
Length
105 bp
Sequences
Splice sites
5' ss Seq
AATGTGCGC
5' ss Score
2.86
3' ss Seq
CTCTCCCATCTTGGCTGCAGGAT
3' ss Score
8.36
Exon sequences
Seq C1 exon
GTGAGGCTGCTGGGCCACAGCCCCGTGCTTCGGAACATCACCAACTCCCAGGCGCCCGACGGCCGGAGGAAGAGCGAGGCGGGCAGTGGAGCTGCCAGCAGCTCTGGGGAAGACAAGGAGAAT
Seq A exon
GTGCGCTTCTGGAAGGCCGGGGTGGGAGCTCTCCGGGAAGAGGAGGGGGCATGCTGGGGTGGTTCCCTGGCATGTGAGGACCCTCCTCTCCCATCTTGGCTGCAG
Seq C2 exon
GATGGATTTGTCTTCAAGATGCCATGGAAGCCCACACATCCCAGCTCCACCCATGCTCTGGCAGAGTGGGCCAGCCGCAGGGAAGCCTTTGCCCAGAGACCCAGCTCGGCCCCCGACCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224:ENST00000344256:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.849 A=NA C2=0.736
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(14.7=100)
A:
NA
C2:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTTCGGAACATCACCAA
R:
GCCGAGCTGGGTCTCTGG
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development