MmuINT0032750 @ mm10
Intron Retention
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25B [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131191350-131191721:+
Coord C1 exon
chr2:131191350-131191386
Coord A exon
chr2:131191387-131191595
Coord C2 exon
chr2:131191596-131191721
Length
209 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TGCCCCGTCTGGTCCCCTAGGTG
3' ss Score
10.8
Exon sequences
Seq C1 exon
TGAGCAGTTTACCATAAAACGCTTCCGATCCTTACCA
Seq A exon
GTGAGTGTCCTCCAAGGCCTGACAGGGAGCTTAGGCATCCTGGTTGGCATGGACATCATGGGGGTACCTGTGAGAGGTGTTTGAAGTAGCCAGGCATTCCTGTACCAGTTGGGGGAGGTGGGGTTTCATCTGGCGGGCTGCGGAGTCGGAGCATTCTGTGATACCCAGAATGCAGCCTTTAGTAATTACTGCCCCGTCTGGTCCCCTAG
Seq C2 exon
GTGAGGCTGCTGGAACACAGTCCGGTGCTGCAGAGCATCACCAACTCCCGAGCACTGGACAGCTGGAGGAAAACTGAAGCAGGCTACCGAGCCGCCGCCAATAGTCCTGGGGAGGACAAAGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330:ENSMUST00000028804:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(4.4=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTTACCATAAAACGCTTCCG
R:
ATTCTCTTTGTCCTCCCCAGG
Band lengths:
160-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types