BtaINT0035083 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43687947-43688330:-
Coord C1 exon
chr29:43688258-43688330
Coord A exon
chr29:43688054-43688257
Coord C2 exon
chr29:43687947-43688053
Length
204 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TGAATCTCCTTCCCTCCCAGCTC
3' ss Score
8.5
Exon sequences
Seq C1 exon
GCTGAGCAGCAAGGAGGAGGTTCTGTGCCGGCTGCAGGAGGAGAACCGGCGGCTGAGCCAGGAGCAGGAGCGG
Seq A exon
GTGAGCGGTGCAGACGGAGGGTCAGAGAGACCCAGAGATGGGGGAACAGGCAGGGAGCCAGCTGAGTGGGTGGGCACAGCTGCCAGGGATGTGGGCCAGATGGGGTGGGTGAGCCAGGCTGGACATGGGCAGGCTCAGGGCTGGGGGCTGATCCCCGCTTCCCACGTGGCTCATCTGTGTCTCTTGAATCTCCTTCCCTCCCAG
Seq C2 exon
CTCATGGAAGAGCTAGAGCGGGAACAGCAGAGCAAGCAAAGGCTGGAAGGTGAGCGGCGGGAGACGGAGAGCAACTGGGAGGCCCAGATCGCCGACATCCTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=NA C2=0.681
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCAAGGAGGAGGTTCT
R:
CTGAGGATGTCGGCGATCTGG
Band lengths:
174-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]