MmuINT0032904 @ mm9
Intron Retention
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6314705-6315096:+
Coord C1 exon
chr19:6314705-6314780
Coord A exon
chr19:6314781-6314989
Coord C2 exon
chr19:6314990-6315096
Length
209 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
CCCGTCCTCTGTGGCCTCAGCTG
3' ss Score
7.34
Exon sequences
Seq C1 exon
GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG
Seq A exon
GTGAGAAGGGTAGACAGACAAGGGACAGGCTGGGTGCCAGCAGGGTCAGGGCAGAGCTCCAGGGTCTCAGCTGCTGTAGCATGTGGGCTTCTACAGGGTTCAGGGTGGTAGGTGATCTGTGGGGAGACTAGCAGGGGGAGGGCAACTTGTAGACATCTGGGGCTACAAGGGCCACTGAGGACTGAGCCCCCCGTCCTCTGTGGCCTCAG
Seq C2 exon
CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-Cdc42bpg:NM_001033342:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(1.1=7.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGTGTTGGGAAAGAGGAGG
R:
CTGAGGATGTCAGCGATCTGA
Band lengths:
180-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: