BtaINT0035085 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43687383-43687860:-
Coord C1 exon
chr29:43687746-43687860
Coord A exon
chr29:43687532-43687745
Coord C2 exon
chr29:43687383-43687531
Length
214 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGATGCCCCCTGGCCACCAGGAC
3' ss Score
5.49
Exon sequences
Seq C1 exon
GGTGAATGATGAGAAGGTGTCAAGAGGCTACCTGCAGGCCCTGGCCACCAAGATGGCCGAGGAGCTGGAGTCCTTGCGGAACGTGGGCACCCAGACTCTCCCTTCCCGGCCGCTG
Seq A exon
GTGAGCCCCGGGAACCCCCGGAGGGGAGGGGTGCTGGGAGCCGCACTCCGCAGGTAGGGACACTGAGCTCATGGAAGATCAGGGACTTGCCTAAGCTCCCGCCGGCCCTCAGCAGAGGCGGGGCTTTGAGCCTGGCCAGGTGGTGTGGGGTTGGGGTCCCTCAGCGGCAACCCGAACCTGGGGGCGTTGCACGTTGATGCCCCCTGGCCACCAG
Seq C2 exon
GACCACCAGTGGAAGGCACGGAGGCTGCAGAAGATGGAGGCGTCAGCCAGGCTGGAGCTGCAGTCAGCGCTGGAGGCCGAGATCCGGGCCAAGCAGGGCCTGCAGGAGCGGCTGACGCAGGCGCAGGAGGCCCAGCTGCGGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF088265=DMPK_coil=PU(53.4=62.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAATGATGAGAAGGTGTCA
R:
CCTGCTTGGCCCGGATCTC
Band lengths:
212-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]