RnoINT0032680 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221682446-221683007:+
Coord C1 exon
chr1:221682446-221682560
Coord A exon
chr1:221682561-221682858
Coord C2 exon
chr1:221682859-221683007
Length
298 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ATATCCTTGGTTGCTCCCAGGAC
3' ss Score
7.88
Exon sequences
Seq C1 exon
GGTGAATGACGAGAAGGTCTCGAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCCGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACCCAAACACTCCCTACCCGGCCTCTG
Seq A exon
GTGAGCCCTGTGCTTGTGAGTCGTGGCATGTGTGTACATATGAGAACCACATGTGGGTTCTACCGTGTGGGTCCCCAGGGATTGAACTCAGGTTGCCAGGTTTGGCAGCATACCTCTGCCTTTGAGCCATGTTGTCACCCCCAAACTCCCAGTTTATGCTAAGGGATGAGGAGAGATAGGTCTCTGAGTCTGGCCAGGTGACATAGGAGGCATTTGCTTCAGTGGGAAGGAGGGAGGAAGTGTCTGAAGCTGTCAGGCCTGGAGAGCATCTTACAGGGATATCCTTGGTTGCTCCCAG
Seq C2 exon
GACCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTTGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGGGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCCCAGCGGCAGGCTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.580
Domain overlap (PFAM):
C1:
PF070286=DUF1319=PU(19.8=59.0)
A:
NA
C2:
PF070286=DUF1319=FE(42.2=100),PF088265=DMPK_coil=PU(52.5=62.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAATGACGAGAAGGTCTC
R:
CTCCTGCACCTGCGTCAG
Band lengths:
244-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]