BtaINT0035091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43686159-43686616:-
Coord C1 exon
chr29:43686557-43686616
Coord A exon
chr29:43686265-43686556
Coord C2 exon
chr29:43686159-43686264
Length
292 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GGGCCTGTCCCCCTCGCCAGCCC
3' ss Score
5.33
Exon sequences
Seq C1 exon
GCTGTGTTCCCCAGGACGCCTGCTGCCACCACACCCCCTGCAGAAAGTCCCCCTGCAAAG
Seq A exon
GTCAGTGCCCGGTGGGGCGGGGCAGGGGCACTGAGCCATTCTGCCGGGTTTTCAAGGTCCCGCTTGGGGTTCCCCCCCACCCCCCACCCTGTGCCGGCAGACCGTGATGGGAATGGTGACGGTGGCACTGAGTTTTGAGTACGGCCAGATCCCCTCGGAGCGCTGAGTTCACACTGCCACCTGGCTCATTCGGTGGTCTTGCCTGAATCTCGGGGTGGCCTGGGGGAGGCAGGGGGCTCGGGGGCCTTGGGTGAGGGTCAGACATGGGTAATGGGCCTGTCCCCCTCGCCAG
Seq C2 exon
CCCGGCTCACACACTCTGCGTCCCTGGAGCTTCCCATCCCCCACTAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(62.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTCCCCAGGACGC
R:
GTCACAGCCCAGGCCCTG
Band lengths:
164-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]