HsaINT0031722 @ hg19
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64600703-64601131:-
Coord C1 exon
chr11:64601072-64601131
Coord A exon
chr11:64600809-64601071
Coord C2 exon
chr11:64600703-64600808
Length
263 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
ATGGCTGTCCCCCTCCCCAGCCC
3' ss Score
8.19
Exon sequences
Seq C1 exon
GCTGTGTTCCCCAGAGCACCCACTGCCAACACAGCCTCTACAGAAGGTCTTCCTGCTAAG
Seq A exon
GTCAGTGCCCAGAGGGGCAAGCAGGGTGGGGGCACCAAGCAGTTCTGCCAGGCTGAATGGGCACTGTGGGGACACTCCACGTGCATCGTGGCTAGCAGGCACAATTGGGGTGGAGGTGGTGGCGATGAGCTTGCCTGCCGCCATAGATTGGCTGGGACTCGGAGGTCACTGTTGCCTGGCTCAGCCCCTTGTCTTTCCTGACCCCTCAGGGATGGGGCATGGGGCCCTGGGAGGCCTTGGGTAATGGCTGTCCCCCTCCCCAG
Seq C2 exon
CCCGGCTCACACACGCTGCGCCCCCGGAGCTTCCCATCCCCGACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGTTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-CDC42BPG:NM_017525:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(62.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTCCCCAGAGCACC
R:
CATCACAACCCAGGCCCTG
Band lengths:
165-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)