BtaINT0035097 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43681468-43683681:-
Coord C1 exon
chr29:43681780-43683681
Coord A exon
chr29:43681553-43681779
Coord C2 exon
chr29:43681468-43681552
Length
227 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCTGCGCCTGCTGCCTCAGGTG
3' ss Score
7.72
Exon sequences
Seq C1 exon
ACCAGGAACGGCTTGCTCTGGGCACCGAGGAAGGGCTGTTTGTGATCCATCTGCACAGTAACGGTACCCGCCGGCCGGGCCAGGGTGGGCTTGGGTGGAGTCAGCCCCCAGGGACAGAGGAGGCTGGGCCCCGGGCGCCCCTCACCCACCTGCTGGTGACACTCTCCCTCGCCAACCCCGCAGACATCTTCCAGGTGGGCGAGTGCCGGCGGGTGCAGCGGCTGGCCGTGAGCCCTGCTGCGGGCCTTCTGGTCGCGCTGTGTGGCCGAGGCCCCAGCGTGCGCCTCTTTGCCCTGGCAGAGCTGGAGAACGTGGAGGCAGCCAGCACCAAGATCCCCGAGTCTCGAGGCTGCCAGGCCCTGGCGGCCGGGCGCATCCTGCAGGCCCGCACCCCCGTGCTCTGTGTGGCGGTCAAGCGCCAGGTGCTCTGCTACCAGCTGGGCCCAGGTCCAGGGCCCTGGCAGCGCCGCATCCGTGAGCTGCAGGCACCAGCGCCCGTGCAGAGCCTGGGGCTCCTGGGCGATCGGCTGTGCGTGGGTGCGGCTGGCACCTTCGCCCTCTACCCACTGCTTAACGAGGCAGCGCCTTTAGCGCTAGGGGCCGGTCTTGTGCCTGAGGAGCTGCCCCCGTCCCGCGGGGGCCTGGGTGAGGCCCTGGGTGCCGTGGAGCTCAGCCTCAGTGAGTTCCTGCTGCTCTTCACCACCGCCGGGGTCTACGTGGACAGCGCCGGCCGCAAGTCTCGCATGCAAGAGCTGCTGTGGCCAGCAGTGCCCACGGGCTGGGGTGAGGCCTGTGGAGGGCCAGGCTGGGTAGGGCCTGGTATCAGAGGAAGACAGGGTCCTACCCAAATTCCTGAGTTTGGATTGGGAGGCCAGTATGTGCCCTCCTGCCTGACACACCCTTGGTGGCTTGTATGGGATCTTCCTTCATCTTCCTCTTGCACGGGACCTTGTTTTCATTCAAGCTCTTTCCCTGCCTGAACTACTGTCCTCTTTGTAACTGGCCGCCTCTTCAGTTTGCAAGTCCAGCCCCAGGGTCTAGAGCTAGTGGGCCCTCCATAATGAACCCCATGATTGTTGTCAATATCGTTACCGCTTTTACACTCCTCCCCGCACCATCGGTCCTTTGCTCCTTTGTGCTCCCCCACCTGCATTCAGATCTCTGCCCTGACTCTCAGCACGTTCTTATTACAATGACTGGTTTGGTACATGGGGGGTCTGCAGTGCTTCATCGCATCCAGCACGCAGCCCAGGCAAGCACCCCCCAGGGGCTATAATGTTTGGAGGAATGAATGAGTGAACGGCATCAGGGGAGCCTCAAACGTCCACAGGTAGCTGAGGTGTTGGGCTACAGGCTGGAAGAGAGGGACAATGCTCCTTTCACAGCCGCTCTTCTGGGGTGGGGCCTGCGGGTTGGGTGCAGCACAGACACTCGGTGTGTAGGCGTTGGATCCAGACTGCCCGGGGCCAGTTCCCAGCTCCCACTCACCACAAAGTGAGACTTAGCTCTGGGGTTTCCGTCATCTGTAAGTTAGGGACGATAACATTACCTGCCTAGAGTTGTTTGAGAATTAAAGGAGGAAAAATACAAGCAGGCCTGACATGGCTTAGAGTGAGTGCTCCCCGTTCCTTATCTCTGACTTGCCGTGGAGCTTGGGTGGGGCAACCCAGAGAGTCTCCAGGAGGACCTTTGGTGGGGTGTGGAAGTTACAGTGCTGTGACAGGGTGTGCCCTACGATACAGCCCAGAGAGGTGCCTGACCTGCCTGGGGCTGCACCGCACAGTGTCCCACCCTGGCTATGCAGGTTATGCGGCCCCCTACCTGACAGTGTTCAGCGAAAATGCCATCGATGTGTTTGATGTGAGGAGGGCAGAATGGGTCCAGACCGTGCCACTCAAGAAG
Seq A exon
GTGAGTGCGGGGACTTCCCTGATCACCCAGTAGCTAAGACTCTGCGCTCCCAGTGCAAGAGGCTTGGGTTCAATCCCTAGTCAGGGAACTAGATCCCACATGCTGCAACTAAGATCCAATGCAGTGAAATTAATTAAAATTTAAAAAGTGAGGCCTGCCCAGGCCCCTGGGGCTGGACTGGGGTGCGGTTGGATAACATGGTGTGACCTCTGCGCCTGCTGCCTCAG
Seq C2 exon
GTGCGACCCCTGAACCCAGAGGGCTCCCTGTTCCTCTTTGGTACCGAGAAGGTCCGTCTGACCTACCTCAGGAACCCGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(97.8=80.1)
A:
NA
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGGAGGACCTTTGGTG
R:
CCTGAGGTAGGTCAGACGGAC
Band lengths:
300-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]