HsaINT0031731 @ hg19
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64594999-64595255:-
Coord C1 exon
chr11:64595158-64595255
Coord A exon
chr11:64595084-64595157
Coord C2 exon
chr11:64594999-64595083
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CGCTGTGCCTGCTGCCTCAGGTG
3' ss Score
7.57
Exon sequences
Seq C1 exon
GGTATGCGGCCCCCTACCTGACAGTGTTCAGCGAGAACTCCATCGATGTGTTTGACGTGAGGAGGGCAGAATGGGTGCAGACCGTGCCGCTCAAGAAG
Seq A exon
GTGAGGGTCCGCCAGAGCCCTGGGGTAGCGCCGGGGGTGGAGGCGTGGCCTGACCGCTGTGCCTGCTGCCTCAG
Seq C2 exon
GTGCGGCCCCTCAATCCAGAGGGCTCCCTGTTCCTCTACGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAACCAGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-CDC42BPG:NM_017525:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.0=100)
A:
NA
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTACCTGACAGTGTTCA
R:
GCCAGCTGGTTCCTGAGGTAG
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)