BtaINT0035102 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43680539-43680869:-
Coord C1 exon
chr29:43680746-43680869
Coord A exon
chr29:43680625-43680745
Coord C2 exon
chr29:43680539-43680624
Length
121 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
3' ss Seq
TCATCCTGCTCCTGGAGCAGTGA
3' ss Score
2.59
Exon sequences
Seq C1 exon
GCTGCGGAAGTGAAGGGACGAGGTGCCCGCGGCTCTGGCCCGCAGCGGCCCCACAGCTTCTCCGAGGCCTCGCGGCGCCCAGTCTCCATGGGCAGTGACGGCCTCGCTAAAGATGCAGACCCCA
Seq A exon
GTAAGGACAGCCTCACCGCCTCCACTACCTCTGCGTCCCTCCCCCATGTTTCCACCCCCTTTGGACGCTTCAAATCTGACCCTGGATTTTCGTCCCCTCGCTCATCCTGCTCCTGGAGCAG
Seq C2 exon
TGAAGAGGAAGCCTTGGACATCTCTGTCCAGCGAGTCTGTGTCCTGCCCCCAGGGATCTCTGAGCCCTGCAGTCTCCCTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGAAGTGAAGGGACGAG
R:
CAGGGAGACTGCAGGGCT
Band lengths:
203-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]