MmuINT0032925 @ mm9
Intron Retention
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6322555-6322881:+
Coord C1 exon
chr19:6322555-6322678
Coord A exon
chr19:6322679-6322792
Coord C2 exon
chr19:6322793-6322881
Length
114 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGG
5' ss Score
6.57
3' ss Seq
TGTCTCCCTACTCCTGCCAGTAG
3' ss Score
5.97
Exon sequences
Seq C1 exon
GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT
Seq A exon
GTAAGGACAGCCCTCCATCTTCCAGTACTCGCATGCTTCCCCCACCTTACCACGCCTTCCGAGCCCTTAGATTGACCCAGGCATTTTGTCCTTCTGTCTCCCTACTCCTGCCAG
Seq C2 exon
TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-Cdc42bpg:NM_001033342:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PD(14.7=11.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAACAGAAGAGCAGAGGT
R:
CTGTATCAGGGATGCTGCAGG
Band lengths:
211-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: