BtaINT0037028 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038139 | CERCAM
Description
Bos taurus cerebral endothelial cell adhesion molecule (CERCAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001102035]
Coordinates
chr11:99025176-99025447:+
Coord C1 exon
chr11:99025176-99025252
Coord A exon
chr11:99025253-99025340
Coord C2 exon
chr11:99025341-99025447
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGCCCCCTTGCCTCCTCCAGGTG
3' ss Score
11.82
Exon sequences
Seq C1 exon
TGGATGGGCCCCCGATGTGGGCCTCGGCTCATGTGTCCCGGCCCCCAAAGAGGCCCAGCAAGATGGGGTTTGATGAG
Seq A exon
GTGAGTCCTCCCGGCCTGCAGGACTGGGGTCAGGAGGCGGGCTCTCCCCTCCACCCTCAGCCTCCTCCTGCCCCCTTGCCTCCTCCAG
Seq C2 exon
GTGTTTGTCATCAGCCTGGCCCGCCGGCCCGACCGCCGAGAGCGCATGCTGACTTCACTCTGGGAGATGGAGATCTCTGGGCGGGTGGTGGACGCTGTGGATGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038139:ENSBTAT00000004595:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGCCCCCGATGTGG
R:
CATCCACAGCGTCCACCAC
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development