GgaINT0123810 @ galGal4
Intron Retention
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4935718-4936010:-
Coord C1 exon
chr17:4935934-4936010
Coord A exon
chr17:4935825-4935933
Coord C2 exon
chr17:4935718-4935824
Length
109 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ACTCTGCTCTTCCTCCCCAGATC
3' ss Score
12.26
Exon sequences
Seq C1 exon
TGGATGGTCCCCCCATGCAGCGCTCCCGGCACATCTCTGTCCCGCCCAAACCACTCACCAAATTGGGCTTTGATGAA
Seq A exon
GTAAGTGCCCCCCGTGCTGACCCCATGTCCACTGTCCCACACTGATGGGTTCCTGCACTGATGTGCCCCCCCTCCCCTGCCCTGGTGGGACTCTGCTCTTCCTCCCCAG
Seq C2 exon
ATCTTCCTCATCAATCTGGTGCGGCGGCCGGACCGGCGCCGGCGGATGCTGGAGTCCCTGCAGGAGCTGGAGATCGCTGCGCGGGTGGTGGATGCAGTGGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986:ENSGALT00000007990:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCGGCACATCTCTGTCC
R:
CTCCCATCCACTGCATCCAC
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]