BtaINT0037056 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000099 | CERS2
Description
Bos taurus ceramide synthase 2 (CERS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034667]
Coordinates
chr3:19835017-19839956:+
Coord C1 exon
chr3:19835017-19835075
Coord A exon
chr3:19835076-19839782
Coord C2 exon
chr3:19839783-19839956
Length
4707 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CTTCTCCCTTCCTCACTCAGGAT
3' ss Score
10.72
Exon sequences
Seq C1 exon
GAGAGACGGAGCAGCGGCTCCCGGCCGGGCCAGCTCCGCGACGCCGCAGCCGCCGCCGA
Seq A exon
GTGAGTCGGAACCCGCGCCCGGGAGTCCGCGGCGCCGCGCGCAGGGGTGGGGAGGCACGGGGCGCGGAAAAGTTGGGAGAACTGCGGGGGCCGCGAGGACGCGGCTCGGCGGACAGGGCCTGGCGGGGCCGGGAGCGGGCCGTGGAGCGGAGCGAGGCGCGGGCGCACACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCTGGCTGGGGAATCCCGTGGCTAGAGTGAGAGGAGAGTGAAGCTTTTTCTAATCGGTTCACTGTGCCCACTCCGGGAGGGAGGTCAGGGCGTCCATGTGCTTAACGGGAAACAGGAAGGAGTGGCTCAGAGTGTCTGCCCCTGGCCCCCGCCCCGTGGCTAAGGCTCTTATACCGTTATGGGGTGTGTGGGGCAGGGGTAGGGGGAGCTGCTGGTGAAACTGGTTTTCTGGGCCTCCCTTTGCTAATTTCTGGCCCGGAGGCTCTCTGGCAAGTAGGTTAATTGCATGTGTGGGGTTTTAATCTGTGGCCTGAGTTTAGAGGTTCACTTCCTAAGGTAGACTCTTGGTGTCAAAATCTGATCGATTCTTCACCTGAGTTGCTAGGTACAGGAGATAGGGGGTTCTGAGGATCCTGAGGAATGGAGTGAGCCCCTCTTTCTGGAGAAGTGAATCAGGAAAGGCCTCCAGCAGGCAGTCACTCCCACATCTGTCTTAGCGGAGGTTGCAGTCCCATAGCGGAGTCCAGGTGGCTGGGCCTAATGTGGGTGGCTGACTGGGCTTGTGATGGTGCTCCTAAGGGTAAGGACTGTCTGCAGCCTCCTCCCTCAGGGCCTGACCCTAATCATACAGTGACCTGCACAAACCCTGTTTTGAAGAGAGAGAGAGTTCCTTGTCTTCCTTGGTACCCCACAGTCCACTCCCTTCACTGGGGCCTCTGGCCGGCTTCCCCTCTGGGAGGGAGGGCCTTCACTTTCCCGTCACTGGCCACAGGCTGGCCGATCCTTCACTGTGCCTTTAGCATGCCCCCTGCCCGCCCAGCCCCCCACATCCCCATCTACTTCCTGAATTTGCCAGTCATTCTCTCCCTCTGGGGGCTGTAATCTCCTGCAGTCTTTGGCTGTGTTGGGGCCACAGAAAAACTAAAATTTTGAGACCTCTACTTCAGCCTGGAGGGATGACACACCTCTTCTTGGCTTCATCCATTGCTCACAGCTTTCTAGTTTGTGACCTGGTGTAGCTGCCTGAAAAAGTTTTCAACAAGCTGGACTATTCAGGTCCTCTGCCACTTCTTTCCACTTCTTTTTTGTAGACCGCCAGGCTCCAGTGAAAGCTGGGAGCCTCTGGGATCCTGTCTTTGTCACTCTCTCTTCCCTTACTGATTGTATTGTATCTTCTTCAATTATTTCTCCACACTCTGAGAGCCGTTGGGACTATTATCACGTTGAGTCTGTGAGATCTCTTCCTCATAGCCTCAAACTTCTGCCCTCCTAGCAGACTGGGTCTACAAGTCCCCTTGGGGACTCTCTGCCCCTTTTCATCTGTCTGTGGGAGTCTGGGATGGGTCAGTCAGAGTTGGGCAAAAGGTAGCAGCTGGGTGGAGCTCTGTTCAAGTTCCTGGTAATCCAATGCCCATGAAATCCCTGCTCAGCTGGCCGTTCTCCAGCCTGTGCCTCATAAAGTGGTGTCTGTGTCTCTGAGGCAGGTGTATTTGTGCATGAGAGAGACAGAGACACATACACATGCACACACCCTATTGTTTCTTCATGTGTGTGGGGGAGTAAATCGTTTGAGTGGAAAAATACCTACAGGTGTGATTTTCTCCACCAGGAAATTAAGTAATGTGACCCAGAAAAGCAAGCACGAAGGCACATTCCCTTTTCTTGACCCACCTTTTTGTTGGTGGGATCCATTGCTTGGCTTGGTGTGCCAGGGACGCCACTGGGAGTGGACTGGTAGGTTCTGTGGGGATGTATAAGTGCAGCTGGCGGGCCTGGCCCAGGAGCCCCTATTGTCTTCCCTTCCCCCTCACATGGAGTCCGAAGTCCTGACCCTGCTGAATCTGGTGCCTCTTCCTGCTGGGCTAGGCTCCAGGGGTGAGGGGCAGGGTCCAGGCCACCACTCCTCTGCTAATGGAAGTGCTGGGCAGTAGGGGAGGGCTGTGGTCACAGAAAGCCTGAAACCCGGGGGTGAGAGAGCCCCCATTCACAACTCCCAAAACATCACACTCTCTGCTCACACCATCTTCTGCTGTCCCTGTTTGGAGCAGGCAGGGGCCAGGTGCTACCTTGTCCTGGGATTGAGATAGTTGCGCTGTCCAGGCGCTTGCCTTTGACCCATCTCTGACTTTCTGCCTGCTTCTCTGCCTCCTCACCTTCTTTGTAGGCATGAGGCATTCCTGGGCCCCCGGGAGTCATGGAGAGGGACTCTATGCTTGGCCTCCAGGATCCCAGCCAGCCCTCTGAGTCTTTTTAATCCTCAAAATATCTGTGACAAAAGAAACTTACCTGCCGGTTTCCACTGACCAGGGTAGGAATGGGGCCCAATGTCTAGGCCAGACAGTACCCTTGGCTTTAGTCCTCAATGGAGGACAAATTGGGCCCCAAGGGACTAGCAGTCAGGTGACTGAGTCAGGTCTGTTTCTTCACCTCCAATCAGACTAAGCAAAGAAGGTGGCAAGAAGAGCTGGAGGGGTGCCACCGCATGTAGGCTTTCTGCCTTGTCCCTTCTTTACTAAATTTTCTACAACTTCTCTCAAAGAAAAAAGTGTGTCTGTGTGCACTGTCGTGTGGGGAGAGTTCTACTCTGATAACTGTGTTTAGTTTTGTTCAGTTCCGAAGGCTTCCATCTCTTTAACTAATTAAATATTTATTCTGGCCAAGGTGGAGAGGGAAGGGGCAGTGTCCTCAGGAGCTGAGGCCTGGAATGTGTGTGTGTGTGTGTGCGTGCGTGTATGTGTGTAGAACCCGTGCTGTTGGGGGCGGGTGGAGCTGAAACTCCTTTACTGTCAGAGCTGCCCTCTGCTTTCATCTGAAAGAGCAGTGACCAGGAGTGGGGACAAGAGGGTAAAGTCCTTGAGCTGAAATGCTGACCCGTGACAGGCTGAGAGGGATTTCGCAAGTGCTTCTGTGGTGGGTGGGGGCGGAGCTGTGGAGCAGCCCAGCTCAGCTGTGATATGATCAGCCTTCAGCGAGGCACCGGTTGGTCTCCAGTTCACAGCAGAGAACAATCTCCCAACTCTATTTCCTCCGCAGCAGGGAGGGGACCACCTTCCTTCTGTGTCAGCTTTTAGTCTCAAGGCCAGCCTGGAGACCACCTACCTGGCCTCCCTCCTCGGAGGATGAGGGCTTGGTAGCCTGGAAGCTTTGCCCTTGTCATCCTACTGGGTTCACTGCTGAGTCCTAGGACTGCCAGTTGTGTGGACCACCATCGCTGATTCTACACCATCATCTTGCTCCTTCTCTCAGCTCCAAGCAGCTGCTGTTCCCGCGTGAGCCTCAGATCGTACCTTCCTTCACTTGGTATCCAAGTGGTCACCACCACCCTGTAGATCCTTTCTCTTTCCGTGGACGAAACGGGGGAGGGAGGTGGTACAAAGCAGCAGCTCTTTCCTGAGCACTGAGGGTATTTGTGATGGGTGTTCCCTGAGCAGACTAGTATTTTATTTTCCAAAGGAGCCTTAATCCAAGTAGCTCCTAATTCTACCAGATGTCTTAGTCTGCTGTATCGACTCTCTATCCTCCAACTCCTGACTCCCTGCAGCCTTGTCTTCATTTTGTTTCTGAGAATAGGCTTCACATAGAGTCCTTCTGCCTTATGTTTGGGAATGGATGGCTTGGGCATGGGCTATTAATTTTGTGTGCAGTATTTTGATGTCCATTGATTGTCCTTGAGCTCAGCACTATTTGGGGGCATGATTTTGGTTTATTCTGGCCTCTTAATTTTCCCTAGGACCTGCTGCCTCAGTGGGTTATAGGGAAGGGGGAGAAAGGTCTTGCCCCAGCCCTGCAATCCTTTCTTGGGCTCCCTGGCAAGGAAGCTTCCAGTTATGGGTTGATTTGGGAGCTCTGATGGTTCAGATGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTTGATCCCTGCCTCAGGAAGATCCCTTGGAGAAGGGATTGGCTACCCACTCCTGTATTCTTACCTGGAGAGTTCCATGGACAGAAACCTGGCGGGCTCAGTCCATAAAGTTACAAAGAGTCGGATATGACTGAGTGACTAACACATGGGAGGTCTAGGAAGAGGTTGGAGGGTGGGGGGAAGGGATGATGACTCTGATTTCACTTAAGATTTTTGGCCACGGCTTCTAGGCTAGATCCTGTCTAGTTTCCGTGTAAGAATAGCAAAATGATGGCGAGACCCCAAGGTTCTTGTCTAGGGAATCAGGACTTCCAGGGGATGTTAATGTCACCTTTGGTTGATATTAAGAGTAACTGTTAGAACTGGAAAGCCACTATATTACAGATGGGCACACTGATTCATCCACATGGCCAAGACCAGAGCCCAGGGCCTGAGTCTTTGCCCCTGCTCTTTTTGTTACACTGTGAAAACTGTCTTCCGTCTCCTTCTGCACTGCTGCCTGCTTTGATGCCCTCTACTTCTCCCTTCCTCACTCAG
Seq C2 exon
GATGCTCCAGACCTTACATGACTACTTCTGGTGGGAACGGCTGTGGCTCCCTGTGAACTTAACCTGGGCTGATCTAGAAGACCGAGATGGACGTGTCTACGCCAAAGCCTCTGACCTCTATATCACACTACCCCTGGCCTTGCTCTTCCTCATCATTCGATACTTCTTTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000099:ENSBTAT00000000109:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]