HsaINT0090812 @ hg38
Intron Retention
Gene
ENSG00000143418 | CERS2
Description
ceramide synthase 2 [Source:HGNC Symbol;Acc:HGNC:14076]
Coordinates
chr1:150968918-150975004:-
Coord C1 exon
chr1:150974619-150975004
Coord A exon
chr1:150969092-150974618
Coord C2 exon
chr1:150968918-150969091
Length
5527 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCCCTTTGCCCCTCACTCAGGAT
3' ss Score
7.61
Exon sequences
Seq C1 exon
TAGCGCAAGGTGACGGGCGTGGACGCGGCTGTGGGGCCGGGAGCGGAGGGTTGGGGTCTGGCCTCCCGCGCCGGGGCGAAGGGGCAGCCGCAGCGCAGAGGCCCGCCCCGCCCTCCCCTCCCGTCACGCCCAGCCTCCCGGCCCTTGGGCTGCTCGCGGCCTTTTTTTCCCGGCTGGGCTCGGGCTCAGCTCGACTGGGCTCGGCGGGCGGCGGCGGCGGCGCCGGCGGCTGGCGGAGGAGGGAGGGCGAGGGCGGGCGCGGGCCGGCGGGCGGGCGGAAGAGGGAGGAGAGGCGCGGGGAGCCAGGCCTCGGGGCCTCGGAGCAACCACCCGAGCAGACGGAGTACACGGAGCAGCGGCCCCGGCCCCGCCAACGCTGCCGCCGG
Seq A exon
GTGAGTCGGGGCCCCCGCCCGGCGCCCGAGCCCCGCGCGGGGGTGGGAAGGGGCTGCGGAAAAGTTGGGAGCCCCGGGTGCCGCTTTGTCGCGGGGCCGCGGAGGGGTCGGGCTGGGAAGGCCGCGGGGCCGGGGCGAGGAGGGAGGCGGCGCTGGCGGGGGGCGCTGCGGGCGCTCATGGCGGCGGCCGCCGGGTAAGGCGGGCGCAGCGCCTCAAGGGAGCGGCCGGGGCCGGCGGGCCTGGCGCCGCGGTGTCCGCGGCAGCGCCGCCCTGAGCCGGAGAAGCTTTCCCGGGCAACAGGTAGGGCGGAAGGTGGGGACGCGGGGGCTGCGGGCGACGGGGCCGAGCCGTGGGCTTCCCTTTGTTGGGGAGTGGAGGAGCTTGGTGACCATTGGCGCGAGAGCCTCCACCCTGGCAGCGGCCCGCGGGGTTGCCCTGGCCTGGACGCGTCCTGTGGCTTGGGTGGGAGGAGAGGGGAGGGCCCTGCCCCGTTTTCTTCCTACCGGCCCACCGTGCCCACCTCGCAGGCGAGGTCAGAGCTTCCATGTGCTTAACGGGAAACAGGAAGGAGCGGCCCGGAGCGCCTGCCCCGGCCCGGTAGGGCTAAGGCATACCGTTATGAGGTGTGGATGGCTGGCAAGGGAGCTCCTGGTGGAACTGGCTTTCTGGGCCGTAGCTTGTTAATCACTAGAGGCCCGTGGCAAGTGGGTTGACTGCAGGTGTAGAGCACTCATCTTTAGCCTGCAGTTGGAGTCTCTCCCTCCCTAAGCCTAGCTCCTGGCATCAAAACCTGGTTTCAGTCACCTGAGTTGCCAGGCCCAGGTTCAGGGGGTTCTGAGGATCGTGGCGAATGCAGTGAGCCCCTGTTCCTGGAGAAGTGAGTCCGAGCAGGCCTCCAGCAGGCAGTCACCCCCATATCTGTGCTGGGGCAGGGGTGGGTGGCGGTTGCTGCCGCATACCGGAGTCGGGATGACCGCACCGGGGTGTGAGTGGCTGCACATGTAAAGGGGCTCCTAAGGGTAAGGACTTGCCTGCAGTCCTGTCCCTGAGGACCTGGCGCTGACCATACCGTGATCTGCACAGTCTGTTCCAGAGAGGGATCCTTTTCTCCCCTGGTCCCCCACTTCCCTCACTGGGGCCTCTGGCCAGATTTTCCCCTGGGAGGAAGGGCCTCCTTTTACCCCTGTCACTGGCCATAGGCTGGCTGATCCCTCACTGTGTCCTTCAACACCGCCCCAGCTGTCTCTCAAACCCACCGGCGTCTCCCTGCCCCTGGGGCCATAGTCTCATGCAGTGTTTTGGTCCGTGGAGGCCTTTGGTGGGACTTTGCAGACAAGCTGTAGGCCAGATGAGGCTGAGGACTACTGTTCTGACTGCCTCTCACCCACCTCTTTTTTACAATCTGGCTTATTTTGAGGCCCATCCTGCAGCCTGGAGGGATAACACACCTCTCATTGGCTCCATCCATGGCTTGTAGACTTCTAGTACATGACCTGCTTCTGTTGCCTGAAAGTTTTCAACAAGGAAGACTATTCAGGACTTCTTCAGTGGAAGCAGGGAGCCGGTGGGACCTTTGTCACTCCTCCCTTGTCAACAACTCCTTTCTATTTTCCTCAGTTATTCTTCCAAACTATGAGAGCCAGTCAGACTGACCACCTGGAGTCTGAGAGAATTCCTTCCTCTCAGGCCGAAACTTCTGCCTTCTCAGCCGTTTGGATCTACAAACTCCCATGGGGATCCTCTGCTCCTTTCATCCACCTAGAGGGGTCTTGTGGGGGTGTCAGTCAGAGTTGGGGCAAAGGTTGGGGCTGGACAGAGTCCTGCTCAAGTTCCTGCTAATCTAATGCCAGTTAAATCCCTGCTCTTCTGGCCCCTCTCCAGCCTGTGCCTCAGAAAGTGGCATCTGTGCCTCCAAGGCAGGTGTGTGTGAGAGAGAGCGTAGACAGATACCATGTCTCTTCATGTGTATGGGGGAGTGAAGTCTGGGTGGAAAAGTGTTTCTAGATGTGATTTTCTCCATAAGAAGTCAAGTAACTGCCCTGAAGGCCCAGGGGGCCTGGAAAAACAGGGTTGTCTCCTTACCGTGTGTACACTTCAGCTTTTCTTGCCCCAGCCTCTTGTTTATGGGGTCTTGCTTGGATCTGTGTGCTGGTGCTAAGAGGCCTCCCCAGTACTGCCACAGGGACCCAACTCTTTGGTTCTGTGGGGATGTGTAAGTGAGGCCGGCCAGGCCCCAGCTGTCCTCCCCTCTCTTCATGTTGAGTCAGAGGTCCTGACCCTGCTGAATCTGGGGCCTCCCTGCTGGGGAGATGGGGGTAGTGCCTCTCTGCTAATGGAGGTGCAGGACCACCAGGGAGGGCTGTGGTCATGGGAAGCCTGCAACCTCAGTGTAAAAGCCCCCATTAATCTGCATTTCCCAAGTCTTCCACTCTCCCTGCTTGGAGTGGAAGAGGACAGGCGCTATCTCATCTTGGGGATGAGGAAGTTGCACTGCCCAGGTGTCTGTCCTTGACCATGCTCTAGTGCCTACTTTGCCTGCCCCCCACCCCCTGTTTTGCAGGCATGAGACATTCCTGGGCCCCAGGAGTCCAGCAGGGGCTCCACCCTCCCTCTGCGACTCCAGCCTGCCGCCTGACTAGAGAAACATCCCTGCCAGTTTTCACAGACCTGGTTGGGGATGGGATCTGAAGTCTAGGACTGCCAGGGCAACATGGTACCTTTGGCTTTACATTTCCCTGGAGAAGTTGGGCTCCAAGAGACAGCAGTCAGGTGACTGGGTCAGGCTGATTTCTCGCTTCCAATCAGGCTGAGCAAAAAAGTGGGAAGAGGGGGCCATGTGCACACATCAAAGTGTTCCGCATTGTCCCTTCTCTGTGCATTTTCTACCCTTGTCCCTTCTTTATTCAATTTTCTACAACTTTTCTCTAGGAAAAAAGTGTGTGTTTGTGTGGGGAAAGTTCCACTGTGGATAATTACATTTAATTTTGTTCAGTTCAGAAGGCTTCCATCTGTTTAATTAAATATTTATTCTGGCTGAGGTGGAGGGGGCAGGGGCAGTGTCTGGAATGTGTGTGTGTGATTTGGGGGAGGAGGAGGGGAGAAGGTGGAGCTGAAGCTCCTTTACTGGCAGTGCTGACCTCTGATTTCATCCGAGAGAGCAGTGACCAGGAGTGGGGACAAGGGGGTAAAGTCCTTGAGCTGGAATACTGACCCGTGACAGGCTGAGGGATTTCGCAAGGGCTACAGTGGTGGGTGGGGGTGGAGCGGGAGCTGTCAGAGCAGCAGCAGGACCAGCCCAGCCCAGCTGTGGTCTCAGGCTCTGTCTTCAGTCAGTGGCACCAACTAGTCTCCAGGTCACTGTGGATAACAATTTCACCACTCTCTTTTCTTCCTGTCTCTGCTTTCACTTTCTGGGCCAGCCTAAATCCCACCGCCTCATCTCCTTCCCAGGAGAACAAGGGGTGGGGAGCCTGGAAAAGACTGTCATGGTCATCCTGCTGCGGCTTCTTGCTGAGTCCTAGGATTGCCAGGTGTTTGCTGGACCCAGCATCCCTGGCTCTCCTGGACCATCTTGCCATTCCTCTCAGCTTCAAGCAGCTGCTCTTCCCTCATGAGCCACACACGTCTGACCGTTCCCTCCCTCCTCTGGGTATCCAAGTGGTCACTCCCACCATGTTGTTCGTCTTTCAGTTGGGGGAGGAGGTTTACATAGCGGCTCTTTCCTAGACTGAGAGGGTATGGGTGTTCCCCTGCAGACTAGGATTCTGTTTTCTGGATGAGCATTTATACGAAATAGCTCTGACCAGGCACCGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCTGGCAGGTTGCTTGAGCCCAGGAGTTCAAGACCAGTCTGGGCAACATGGCAAAACCCTGTTTCTACCAAAAAAAAAATTCAAAAATTAGCCAGATGTGGTGTGTGCTACTTGGTAGTGCATGCTACTCATAGCCCCAGGCACTCGGGAGGCTGAGGCAGGAGGGGAGGATGGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGTGATTGTACCACTGCACTCCAGCTTGGGTGACAGAGGAAGACCCTGTCTCAAAAGAAAATAAAAGAATAGCTCTTAATTCCATCAGATGTATTGGTCCGCTCTCTTGGTTCCCTGCCCCACAATCCCTGACTCTTTGCAGCCCTACCTTCACTTTTCTTTCTGAAGAGTTATACATAGGGTCCTTCTGCCTTGTGTGTAGGGACTAGATGGCTTGGCATGGAGTGTCAACCTTGTGTGCAGTAGTTCGATGTCCAGTGATTGTGGAGCTCAGTGTCATTTGGGGACATAATTTTGCTTTACCTTGGCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTGTGTTACCCAGGCTGGAGTGCAGTGGCAAGAGCATGGCTCACTGCAACCTTCACCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACATCCAGCTAATTTTTGTATTTTTTGTAGAGATGGGGTTTCACCGTGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCAGCCTGCCTTGGTCTCCCAAAGTGCTGGGATTTCAGGCGTGAGCTACTGCCCAGCCTACCCTGTCTCTTAATTTTTCTTTAGGGACTTGCTACTCAGATGGGTTGTAGGTTGTAGGGAAGGGGAAGAAGGGTTTGCCTCAGCCCTGCAATGTTTTGGGGCACCCCCTGGAAGCTTTCAGCTGAGTTGGCTTGGAGGCTCGAGGAAGTGGCCAGAGTGTAGGGGGATAAGGGAGGGACTTTACTCAGATTGTTGGCTACAGCTTCTAGGGCCAGGTCCTGCCTGTCTTGCAGGTTAAGATAGCAAAATGACAAGACCCCCAAGGTTCTTCCCCCACTCCCCGAAATCAGAGGTTGTAAGGACCCCAAGTTTCTTAATTCCAGGGAATCACGTCTGCAGGTTGCTGTAGACAATAAATGCTTTTTTTTTTTTTTTGAGACAGTCTCGCTGTCACCTAGGCTAGAGTGCAATGGCGTGATTCCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGGCGCCCGCCACCACACCCAGCTAGTTTTTTGTATTTTTAGTAGAGATGAGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCAGCCTCGGCCTCCCAAAGTGCTGGGACCACAGGCATGAGCCATCACGGCCGGCCTAACAGTAAATGTTAAAACTGGAAAGCCACCGTATTACAGATGAGGAAACTGATTTGCCCAAGGCTACATAGCCAGGATAGGGATCTAGAGTTCGACTCTCTGCCCCCTTCTCCTTTTGATACATCCTGAAAACTTTTATTCATCTATCTCTTCCTCCATAGCTACTCCCTCTTGATGCCCTCCCCTTTGCCCCTCACTCAG
Seq C2 exon
GATGCTCCAGACCTTGTATGATTACTTCTGGTGGGAACGTCTGTGGCTGCCTGTGAACTTGACCTGGGCCGATCTAGAAGACCGAGATGGACGTGTCTACGCCAAAGCCTCAGATCTCTATATCACGCTGCCCCTGGCCTTGCTCTTCCTCATCGTTCGATACTTCTTTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143418:ENST00000368954:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development