BtaINT0037449 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038171 | CFHR5
Description
complement factor H-related 5 [Source:HGNC Symbol;Acc:HGNC:24668]
Coordinates
chr16:77880617-77885410:+
Coord C1 exon
chr16:77880617-77880765
Coord A exon
chr16:77880766-77885215
Coord C2 exon
chr16:77885216-77885410
Length
4450 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTTTGTTTTATTTTTCCCAGGGA
3' ss Score
9.19
Exon sequences
Seq C1 exon
AGTCATGCTCATAACTGTAAATGAAGCAGCACCGGGAGGAGCAGCTTCACTGCAGGGCCAGTTTCAATTACACGCTGCTGGCGTAACTGGCATGTTGCTTTTAACTCATGTCCTTCTAATCTTATGGATTTCTTCTGTGGGGGGACAAG
Seq A exon
GTAAGTTGAAAGCCTGAATACAGCTCTGAATATTGAGTTCCTCTCTCAAATGTGTGTGTTGTGTGTACGTATGTTTATAAATGAATACAGGGGTGGAAATATTGGGAATAAGGGATCATCATTTTTGTTTTTAATGAAAATATTTTCTAATATGCAATTAAGGGAAAATAGAATGAAACAATTTTTCTATGTTCTTTAAGTTATGATATATAAGTAGCCACCAAATACAAAACCTGGAGAGAAACTGAATGTTGAAAAATCTGCTTATGATAAAGGTAAGAAGGTAAAGTGCCAATGTCAGTCTGCCTGAAGGCTGCGATGCCAATGCCATGGGCCAGGAAAAGTACACCAAGGAAACCCGGACACCTGCGATATGTTTGAATTTTCATAGATGTTTTAAATTTAAGATTTGAATATTATTAAATTCAGGGATTTCCTATTTCAATCTAATCATCACTTGACAAAGAAAAATCTTTTTTTTTTTTTACTAAAATATAATTTGACATAAAACAGTTTCAGGTGTACTACAGAGTAATTTGACGTTTGCATACATACATTATGAAGTGGTCATCGTGATAATTCTCATAACAATCTGTCCCCATACAAAGGTATTACAATAGTATCGATTCTATCCTTTATGCTGTATATTACATCCCTGTGGCTTATTTATTTTCTAACGGGAAGTTTGTTCCTCTTAATGTTCTTCACCTGTTTCACCTGCCCACTCTCCGCCTTCCTCATCTCTGGCAACCACATGTTTGTTTTATGACGAGCCTGCTTTTCTTTTGTCTTGTTTCTTTTTGTTTTGCTTTCTAGATTTTGAAATCTTCACATGTAAGTGGGGTCATACAGTTTTTTCTCTGTCTGACTTATTTCAGTTAGTAGAATGCTCTCCACGTCCATCCATGTTGTCACAAATGGCAAGATTTCCTTTTTTATGGTTGAGTAATATCCCATGGTATACACAAATACCACATCTTCTTTACCCATTCATTTCTCTGTGGACACTTAGGTTGCTTTCAACTCTTGGCTATTATAAATAGTACTGCTATGAAGTTTGAGGTACATTTATCTTTCTGAATTAGTGTCATCTCTTTTAATGAAACTATAGAGCATATCCTTATTTTCATATGTAATAAAACTAGTGAGATACCAATAAATTATTTGCTTCTTCTGAGCTTTTCAGCAAGGTTTAATATGAAAAAAAATTGTACACCACTTCTCCTTTAATAAAAAATACTATGTCTCACAGTATTTCAAAAAATGTCACATCTTGTTTTGTGTTGAAATAAAATCTATCACATCTGAGTAATTGCAAATGAAATACCGGGTAAGATCTAGGGTAACTGATTAAACTGTATGTGGAAATGGGATTTTAGTCATGTGCTTTACCGTTTGATTTTCACAAAGTATTTATTTTGCTCTTTTGATGCTAATTTTTGCACATAGTTGTTCTCTTTGGGAAAATCTCTTCAGTCCTAACATAAGAAAAAATAAGAACCATAAAATTCCTTCCTTTTATGATCCACCATTATAAAAGTTGCAAAACATTATTTCTACAGACTTGAAAGTTACTCTAGTTTCTTTATATATTTTTCATAGAATATAATCAGAGGACTATAGTTAGCTAATGGGAAAAAAGTATTTTTCTCCAATAACAGATATTGCTTAGTCGATTAAAAATACCAACTTCTCTGGTTAGCCTGAAGTAAGGATTAGACCTTTACAACATCCTGAAAAACTGTATGTATGGGTGTATTTGATTCTTTTTAACCTATGTGTCTGTTAAATATTGTTTTGAACACCATGGAGAATGGACATTAAGAGAGGATTTCTAAATTGAGGGAGGAGAAGCAGAAGAAGATGAATATAAAATGTAGTCATGTGTAGAATTTTGACAACCTGAAATCTAAGGGGCTTCCCAGGTGGTTCAGTTGTAAAGAGCCCGCCTGCCAAGCAAGAGATGCAGGTTCCGTCCCTGGGTTGAGAAGATCTCCTGGAGAAGGAAATGGCAACCCGCTCCAGTATTCCTGCCTGGGAAATCCCATGGCCAGAGGAGCCTGGCAGGCTATAGTTCATGGGGTTGCAAAGAGTTGGACATGACTTAGTGGCTGCACAATGACAGCATTGTATAAAAAGTGTAAAAAGATGTTCGAGCTTCAATCTACTCTCCTAGAACTTTTAGAGAAACTCTATCAAAAGTTGTATAGATATTAAGTCAGGAGTCCCCAGTGTCCGGGATCTAATGCCTGATGATATCTGGTGGAGCTGATGCAATAATAACAAAAATAAAGTGCATAATAAGTGTAATGCACTTGAATCATTCCCAAATCATCACCCCTCACCCCCAGCCATGGAAAAACTGTCTTCCACAAAAGCAGTTCCTTGTGCCAAAAAGGCTGGGGACTGCTGTACAGTTAAGTGATTCGTGAGTTTGTGTTGGTGCTGGAGAAGACTCTTGAGAGTCTCTTGGATTCTAAAGAGATAAAATCAGTCAATCCTAAAGGAAATCAACCCTGACTATTCTTTGGAAGGACTGATGCTGAAGCTGAAACTCCAAAACGTTGGTCACCTGATGAGAAGAGCCCATTCCTTGGAAAAGACCCTAAGGCAGGGAAAGATTGAAGGCAGGGGGAGAAGAGGGTGACAGAGGATGAGATGGTTAGGTAGCATCACCAACTCAATGGAGGTGAACTTGAGCAAGCTCTGGGAGAGAGTGAAAGACTGGGAATCCATGGGGTTGCAGAGTCAGACATAACTTAGCAACTGAACAGCAACAACAGCTGTTTATTTGCCTATTGAGAAACTGGCCAGAGTGTGAAAGAAGCACTCTAACACTTGCATAATTCAACATTCTTCATGCTTTCAGTAGTAAAATATTTATCAAACCCTATACTGTGCAGCAACAAGTTCAAAAGAAAACGAAAACTCCGTGTCTCATTACAATGCACAGGGTCCTGTGAGGAAAGCAAACCATGCAAATAAGTAGATTGCAAGATTGTGTGTGTGTGTGTGTGTCCTGTAGGAAATGTGCTCACAAGGTTTTATCAGAATGTCGAGGCTTGAGAAATCACTTTCTCCTTTTGCAGTGGGTGACTGGATAAAGGAGATCTACGAAAAGCAGTTATTGAGTGAGTGCCAAGGCTGAGGTACCAGAGTATTTGCTAAACGTTGAAGAATGAACTTTGAAGGGCGGTAAAATAGGGACATTTGGAGGATGGAAGCAAGGTTATTCTACATAGCAAAGAATACGTAGGTTAAAATCTATGGAAATCGACTACTATAGTTTGACAGGCAGACAAGAAATATCTGTAAAAGAATTATGGGAGGTACTACCATCAGTGAAAGCTTCCCTGCTGGCTCAGATGGTAAAGAATCTGGCTGTAACGCAGGAGATCCGGATTCCATCCCTGGGTTGGGAAAATCCCCTGGAGAAGGAAATGGCAGCTCACTACAGATTCTTGCCTGGAGATTCCAATGGACAGAGGAGCCTAGTGGGCTACAGTCTATGGGGTCCCAAAGAGCGACTGACACTGAGGGACTAACACTTCGACTTTCACTGTCAGTGTGTGAGGGTTTTGTTTTTTTCCTCCTCCAAAACCATCTAATGTAAAATTTTAGACACTTAGATAAGCAACTTCAGGTTTCACAAGTGAAATACTATGGGAATTACTAGCTTCAAATATTGTGCAACGTTGAAAATCACCTCTAGATAAGCGGAAAGGGGAAATTTCCCTGGTTAATTTGTGAGCTGAGTTTCTGGAAGTTGCTTTTTTCTTTTTCCAAATAAAGAGAAAACAAACAAACAAAACACTTCATCTTCAATGTACCAGGAAAATACAGACAAGACAGAGACTTCAGGTGGAGTTACCTAGGACTAGGATGCAGAGTAGAGAAAGGAGGTGAGTGGAGATGCCAGCACGTCCTGTACACCAGCGAGGTCTTACTGCTGTCCCAGTCTGCTGGCTCTCAACCTGTGGGAGATTTTCTTCTTGAAGATACTGCAAAGGACGTTATATTTCACATGACTCCAACATCTACATTGCACCTTCACTGACAATGTGCTGTGTGCTAAATCGCTCAGTCGTGTCACTTTTTGCAACCCTATGGACTGTAGCCCGGCAGGCTCCTCAGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGCTGCCATTCCTTCCTCCAGGGGATCTTCCTGACCCAGGGATCGAGCCTGAGTCTTTTATGTTTCCTCCACTGGTAGACGGGTTCTTTACCACTAGCGCCGGTACTCACCGTTACAGATCTTTCTTTGTTCTTAACTAATTAGGACACTGGAGGGCATTAAGCTAAAGGAATTTAAGCTAGCTGAAAGAAAAAAATATTGATAAGATGATTAAAATATGATTTAATGATTCATAAATGTAGATTCATATTTAATTCTTCAGCTTTGTTTTATTTTTCCCAG
Seq C2 exon
GGAGACATTGTGATTTTCCAAAAATAAACCATGGAATTCTGTACAATGAAAAGAAATACAAGGCATCTTTCCCAGTTTCTCTTGGGAAAATTTTCTATTATTCCTGTGAATATAATTATATGCCTCCTTCAAAATACTTTTGGACTCCCATAACATGCACAGAGGGCGGATGGTCACCGACTCCAAAGTGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038171:ENSBTAT00000000078:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=92.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development