HsaINT0034145 @ hg19
Intron Retention
Gene
ENSG00000080910 | CFHR2
Description
complement factor H-related 2 [Source:HGNC Symbol;Acc:4890]
Coordinates
chr1:196912934-196918779:+
Coord C1 exon
chr1:196912934-196913068
Coord A exon
chr1:196913069-196918584
Coord C2 exon
chr1:196918585-196918779
Length
5516 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTTTTGTGTTATTTTCCCAGCAA
3' ss Score
6.36
Exon sequences
Seq C1 exon
TGTTAATGAAAGCAGATTCAAAGCAACACCACCACCACTGAAGTATTTTTAGTTATATAAGATTGGAACTACCAAGCATGTGGCTCCTGGTCAGTGTAATTCTAATCTCACGGATATCCTCTGTTGGGGGAGAAG
Seq A exon
GTAAGTTCAAAACAGACCTGAATATTTAGTTCCTTTTTCAGATACATTTATCGGTTTTTGTGTGTATGCTTACATATTTTTAAATGAATAAATGGATGAAAATATTTTAAATGAGTTATAATATTAATCTATTTTATGGAAATACTTTCTAACATGCAATTAGCAGGAAAATAGAATAAAATTAGTTATCTCCATCCTCTAAGTTGCAAAGGTAAATGGCCACCAAATAGAGAATGTAAAGAGGAATTAAATGAGGGAAAACCTGCTATACTAACGGTGGCAAGGTGAAGTATTAGTGTAATTCTGCATACACTCTGCAATGCCACTAACTAGAACAATCAATCTCAAAAAGATTTGGCCACCTTCAAAATGCTTTTTGGATTTTAGTTTCCTAGATTTGATCATTTAAATTTTAAAGGTCATTAAAATGGAGGAATTCCCATTTCAATCGAATTATCCTTCAACAGAGGGAAATATATTTTACTGAAACAATAGAAAATATCATTTATATATAAACCAGTGAACTGTCAAGAAATTGCTTCTTCTGAGCTCTTAAATGTTGAGAATGAAGTAATGTATCACCTCTTTATTAATACTACAAACGGCTTCTTATGATATTTTATAAATGGTCCCATTTTATTTCATGTTGAAATTAAGGCCACCATATCAAAGGAATTGCAAACAAAATCTCTACCAAGGTCTAGGATACTAATTAAACTATGTCTGTACTTGGAGTTTCGATCATTATGCTTTACCCTTTGATTTCCAAAAAGTTTTTACTTTACTGTTTTGCTGTTTCCTAATGTTTCCAGACCTTTGAACTTTTATTTGAACAGTTTCTCATCAGTCCTGACATAACAGAACAACATGAACAATAACATGCTTTCCTTTAAATATTTGCCCTTAGAAATGTTGCAAAATATTATTTCTATTGCTTGAAATTCATTTTTTTTTTGAGATGGACTTTCACTCTTGTTTCCCAGGCTGGAGTGCAATGGTGTGATTTCGGCTCACCACAACTTCCATCTCCTGGGTTCAAGCAATTCTCCTGCGTCAGCCTCCCAAGTGGCTAGGATTACAGGCATGCACCACCACGCCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCACAGTGTTGGGATTGCAGGCATAAGCCACCACGCCTAGCCCTTGAAATTCGTTTTATTTTGTTTTCACTTTTAGTGCTGAGTTGTAATCACAGGAGTGCGATTGTATGAGTGTATTTGATTTTTCTTAAGTCTGTGTTTATGGTATTTATTAAGTGGCTTATACACCTATTACACATGGCATTACATGAGGATTTCTAAATAGGGGGGTAGCAGAGGAAAATAAGTGAAAAATATGAGAGAAATATGTAGAATTTTGACAATTCCTAACCCTCCTCCCACCAAAAAAAAGTTCAAGCTTCAATCCAGTCTCTGGGAGAAACTTCAGTGAAATTCTATCTAAAGGTTGCCTAGATGTTAAATGATCTGTAAGTGTGTGTTACACTGTCATTTAGGTGTCTACTGAGAGACCTGCCAAACAGCAAAAACAACACACTGAAGCAACACATTTGTATACATAGAAAGCTGCATGCTTCCAGTAGCAAAATATTTATCAAGCACTATGTTGTGCTTCATGTAGCAAAGAAGCTGGAAGAAAATGACAACCCTAACCACACCTCACTGCAACTTACAGTGTCCTAAAGAAAAGCAAAATGTAAATAGGCAAATAAATTGCAAGGCTATATATAGGTGACTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAACAGTCATGCATCACTTAATGATAGGGACACGTTCTGAGAAGTGCGTCCTTAGGCGATTTCCTTCTTATTCAAACATTATAGAGTGGACTTACACAAACCTAGGTTTTATAGCCTACTAGGTAACTAGGCCATATGGTATAGCCTGTCGCTCCTAGGCTGCAAACCTGTACAGCATGTTACTGTACTGAATACTGTGGGCAACTGTAGCACAATTGTAAGTATATGTTTATCTCAATATAGCAAAGTACAATAAAAATACAGTATAAAATATTAAAAACGGCAGACTTGTATAGGGCTTTTACCATGAATAGGGTGTGTAGGACTGAAAGTTGCTCTCAGTAAGTCATTACATGAGTGGTGAGTGAATGTGATGGCTTAGAACATCACCATACACGACTAGAGGTGGTATAAACACTGTATACTTAGGCTAAACTAATTTATTTTATTTATTTATTTACTTCAATAGTTTTGGGGGAGCAGGTGGTTTTTGGTTACATGGATAAGTTCTTCAGTGCTAATTACTGAGCTTTTGATGCACCCAGGATAGACTAAATTTATTTTAAACTTTTCTTCGATAATAAATTAACCTTAGTTTATGTTGACCTTTTTACTTCATCAACTTTAATTTTTATGTCTTTCGAGATAATATTTAGCTTAAAAAACATTGTAGAGATGTACAAAAGATTTTTTCTTTCTGTTCTTGTGCTATAAGCTTTTATCTTTTAAATATTTTACTTATTTATTTACTTTTTAAACCTTTTTGTTAAAAACAGACACAAACACACATATTAACCTCAGCCTACAAAGGGTTAGGATCATCAGTATCACTGTCTTCTTCCTCCGCTCTTGTCCCACTAGAAGATCTTCAGGGCAGTAACAGGCATGGAGCTGTCCTCTCCTATGATAACAAAGGTTTCTTCTGGAATAGTTCCTGAAGGATCTGCCTCAGGAAACATTAACCGTTTTACAGTTAATTTTTTTAACCAGTAGAAGAAGTTAACTATAAAATACTGATAACAATTATACTATATGAAATACATTAACCAGTAACACTTCTATATTGTCATCATCAAGTATTATGTACTGTACAAAATTGTGTGTGGCATATTTTTATGTGACTGGCAATGCTGTAGGTTTATTTACACCGGCATTGCCACAAACATGTGAGTAATATATTACACTGCTATGTTATGATGGCTATTAGGTGATAGGAATTTTTCAGCTACACTATAATCTTATGGGTCCACTGTCACATGAGCGATCAGTCATTGACCAAAATGTCATTATGTGGTGAATATCTGTACAACTGTATATATGTATGTGTGTGTGTGTGTGTGTGTGTGTATCCCAGAAGAAATATATTCATAATATTCTATCAGAATGTTGAGACAAGAAAAATTATTTTCTACTTTTGAAGTGGGTGGTTGTGTAAAGGAGGCTTGCAAGAAGACATTAACACTCCTAGCTAGCACCATTGCAGATATGCACAATGAATACTTGATGAATGTCATAGAGTTAATTCTGAAGCATAGGTACAATATAACTGGGTGATGAAAACCAAGTTATTCTGGATAGCAAAGAATATGTAAGTACAAATGTATGAAAATAAACTACTATAATTTTGGAGGAGTGAAGGATAACTAAAAGAGTTATGGTAGGTTAATACTATCAAGATGGGAGTCTTTCCCTCAATACCTTTACCAAAACTATCTAATGTCAAATTTTAAACAGTTAGATAATCAGTTTCACGTTTCACAAAGTGAAAATATTTCAAATATTGTGCAACATTAAACATTACTTCTAGACAGATGAAAAAGAGAAATTTCTGTTGATTTGTCAGCTTAATTTCTGCACACATCTTCCAAATAAGGTGAAAAATAAAATTATTTCTTATGCAACAGTACTATATTGCAACAATATCTTGACATAAAAACAAAGAGCAGTAATATATGAGGAACTATCTTGAGCTAAATACATACTCAAAGATAAAGTATATCAAACCCATGGAATGTACAACATCAAGAGTGAACCCCAACATAAACTATGAACTTTGGGTGATAATTATATTGACGGTGAGGGAGGTTATGCATGTGGTAGGGAAGAGGAAGTGGTATATAGAAATCTCTACCTTCCACTCAATTTTGCTGTGAAAAACTTGTTAATAAAATATAAAGTCTTATAAAAATATGTGTGTATATATATGAATGTGTACACAAAGAAAGAGTCAAAAAGTATGAAGATTTCACCCATTTTCTACATTGTTTTAATTTTTCCTGCACCATCGTGTATATGGATGTATATATACATATATACACTAGTCCTTTAGTATCCTCAAGGAATTGGTTCCAGGACTCTACCCACCCCCAGTAGATACCAAAATCCAAGGATATGCAAGTCTCTAAGACAGAATGATGTAGTATTTGTATATAACCTGTGTATATCCTCCCAAACAATTTATTTTATTTTATTTTAATTTTTTTTGAGGTAGAGTCTTGCTCTGTCGCCCCCAGGATGGTGTTTAGTGGCATGATCTCGGCTCACTGCAACATACCCCTCCTGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGCTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCTACCACACCCAACCCTCTCATACAATTTAAAGAATCTCTAGATTATTTATAATACCTAATACAATGTAAATGCTATACAAATAGTTGTTATATTGTATTTTTAATTGCATTATTTTTATTGTTTTATTGTCTTTTTATTGTTTTTTTCCGAATATTTTTGATCTGCAGTTGGTTGAATCAGAGGATGTGAAACCAGTGGGGCTGACCGTATATATATGTGTGTATACAAGTATAAATATATAAATACAAATATACAATACATATTTGTATATACAACATTAACCAGAATTTAGCTCTAACTTTATCTTGAGTTGTTCTTAGTGATTTTCTTATATTCTCTCAATTATTTCCACTGAAACTATATTAACTTTGTAACCAGAAAGTATTCAAAATGATATTAATAAACAAACAACAAAACTAACTACCCAACATCTTTTCTGCACCAGAAAAAAAATAGGACAGAGTTTCTGGTGGAGATACCTATGACAGTCAATGAGAATAGAGAAAATAAGTAAATTGAGAGCTAAGAACAACCCTGTCACTCCTCTACTGTATACTAAGTAGATCAGGAAGATTTGCTAGTCTTACACTCTGCCTTCATTCTTAAATTGTTGTGTGAGGGTTTTCTTCTTGAAGACATTGCAGGAGAGTTCATATTTCATATCACTCCAAAATATAGATTTTATATTCATTAACAATTACCTCCTCAAATACTCGTGTACTCTTAGTTAGTGATGTCTTTTCATTCCTAATTTGGACACTGGAGAGCATTTAAGCTAAAGGCATTTAAGCTAAATGAAAGAAAAAAACTAAATGAGATGATTAAAATATAGTCTAGTGATTTATTTATGTAGCTTATTATGTAATTCTTCAGTTTTGTGTTATTTTCCCAG
Seq C2 exon
CAATGTTCTGTGATTTTCCAAAAATAAACCATGGAATTCTATATGATGAAGAAAAATATAAGCCATTTTCCCAAGTTCCTACAGGGGAAGTTTTCTATTACTCCTGTGAATATAATTTTGTGTCTCCTTCAAAATCCTTTTGGACTCGCATAACGTGCGCAGAAGAAGGATGGTCACCAACACCAAAGTGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080910-CFHR2:NM_005666:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=92.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)