BtaINT0038420 @ bosTau6
Intron Retention
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120992840-120993378:+
Coord C1 exon
chr2:120992840-120993056
Coord A exon
chr2:120993057-120993244
Coord C2 exon
chr2:120993245-120993378
Length
188 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TTACCCTTCCTCATCAACAGAGA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTGTTCCTGCGGCTCTTGCCCCAGCTGTTACGGATGCACGTTCGCCCACTGGCCCCAGTGGCTGTGCAGGATGCCCACCCCCGTCTACAGAATGGTTCCTCCTCAGGGTGGCCAATCACAGCTGGGGAGGAGGTGGCCCTCTGCCTGCCCCGCAGTGAGCTTCTTTTCCGGCAGCGCCAGCGCAATGGGCTGGTGAGGGCAGCGCTGGAGAAGCTTG
Seq A exon
GTAAGGCAGGGGGTGTGATGGACAGGAAGGGTCATCTGTTGACCAAGGTGCCAGGCACAGTGGATGAGGGGTCGGCAAACGTCCAGGTTGGGAAGAGAGGGGCTGGGGTCCCTAAGAAAGTGGGGGCCACTTTTTCAGACTGTTCCTCCCCCATTCTACTCCCAAACCTTACCCTTCCTCATCAACAG
Seq C2 exon
AGAAAGGCCCAGAGTCAGGGCAGAGCCCAGAATGGTGTGGCAGCCTGAAGCAGGCCGCCCCGGCCATCCAGGCCTGCGTGGAGGCCTGCAACCTCATTGCCCGTGCCCGGCACCAGCAGACTCACTTTGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943:ENSBTAT00000053164:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(29.1=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTTCCTCCTCAGGGTGG
R:
TCAAAGTGAGTCTGCTGGTGC
Band lengths:
257-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]