GgaINT0032725 @ galGal4
Intron Retention
Gene
ENSGALG00000007906 | CHRNG
Description
acetylcholine receptor subunit gamma precursor [Source:RefSeq peptide;Acc:NP_001026739]
Coordinates
chr9:15083592-15084000:+
Coord C1 exon
chr9:15083592-15083796
Coord A exon
chr9:15083797-15083866
Coord C2 exon
chr9:15083867-15084000
Length
70 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AGTGATGCTGGGTCGTGCAGGAC
3' ss Score
3.07
Exon sequences
Seq C1 exon
GTGTGGCTGCACCTCCTGCCCCGCTATCTGGGCATGCACATGCCAGAGGAGGCCCCGGGGCCACCGCAAGCCACCCGGCGACGTAGTTCCCTGGGGCTGATGGTGAAAGCTGATGAGTACATGCTATGGAAAGCCCGGACCGAGCTTCTCTTTGAGAAGCAGAAGGAGAGGGATGGACTGATGAAAACCGTGCTGGAGAAGATTG
Seq A exon
GTGAGTGAGTACCCCTTGGGCAGAGATGTGGGGCACTCACCGGTGCACCGAGTGATGCTGGGTCGTGCAG
Seq C2 exon
GACGTGGCCTGGAAAGCAACTGTGCACAGGACTTCTGCCAGAGCCTGGAGGAGGCGAGCCCAGAGATCCGGGCATGCGTTGAGGCCTGCAACCACATTGCCAACGCCACGCGGGAGCAAAATGACTTCAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906:ENSGALT00000012833:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(28.0=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGAGAGGGATGGACT
R:
TGAAGTCATTTTGCTCCCGCG
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]