BtaINT0038429 @ bosTau6
Intron Retention
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120992031-120993056:+
Coord C1 exon
chr2:120992031-120992145
Coord A exon
chr2:120992146-120992839
Coord C2 exon
chr2:120992840-120993056
Length
694 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
3' ss Seq
AGCCGCGCACATCTCTCCAGGTG
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTACCTGACCTTCCTCCTGGTGGTGACCATCCTCATTGTCGTGAACGCTGTGGTCGTACTCAACGTGTCTTTGCGGTCCCCCCACACACACTCCATGGCCCGAGGGGTCCGCAAG
Seq A exon
GCAAGCTCCCTACCCTTGCCTACTTCAGCCTCTTCCTGCCCTGTCTGTTCACATGCCCCTACTGGCCCTGGGCACATTCCTCACCCACCAAGTTCAGCAACAGACCAGCCCCATGTGTATCTTGAACATGCCCAGATGGATCAAGAATAATATAGTGCTTACTCTGTGGGAGGCATATTACGTATACTAACTTATTTAACCTTCCTAAGACTTCTGTGAAATGGGTATTGGTCTCATCTCCCATTTATACATGAGACAACTGAGGCACAGAGAGGTTAAGTATCCCAGACGAGGTTGCACAGCAAGAAAGTGGAGGAGGCAGGATTCTGCCCGGGCCGAGTGGCTCCAGTGCCTGTGTGAGCTGCGGCCCACCTGCAGCAGTCAGCCGGGACCCTTGTTACAAAGGCAGATTCCCAGGCCTGCCCCAGACATCCTGGGTCAGAGGTGGGGCCCAGGAACCTGTGTTCATGACAAGTGTCCTGGTGATTCTGATGTGGACAAAAGTTTGGGGGCTCCAGGTCAGTGTCTGGCTCAGGACAGGTAAGCCGTAGCAGGGCCAAGCCACTGCCCCTGCCAGGCTGCCTCGGGCCCCCATCACGTGAACTCTTTGTGCCAATTGTTACCTTCTGCTCCCAAGCCCGGTCACCCAGGAAGTTCTGCTATCCACTAGGCTAAGCCGCGCACATCTCTCCAG
Seq C2 exon
GTGTTCCTGCGGCTCTTGCCCCAGCTGTTACGGATGCACGTTCGCCCACTGGCCCCAGTGGCTGTGCAGGATGCCCACCCCCGTCTACAGAATGGTTCCTCCTCAGGGTGGCCAATCACAGCTGGGGAGGAGGTGGCCCTCTGCCTGCCCCGCAGTGAGCTTCTTTTCCGGCAGCGCCAGCGCAATGGGCTGGTGAGGGCAGCGCTGGAGAAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943:ENSBTAT00000053164:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.4=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(29.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGACCTTCCTCCTGGT
R:
TTCTCCAGCGCTGCCCTC
Band lengths:
327-1021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]