GgaINT0032724 @ galGal3
Intron Retention
Gene
ENSGALG00000007906 | F1NJ22_CHICK
Description
NA
Coordinates
chr9:16713355-16713898:+
Coord C1 exon
chr9:16713355-16713469
Coord A exon
chr9:16713470-16713693
Coord C2 exon
chr9:16713694-16713898
Length
224 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GGTCGTGTCCACGTTTCCAGGTG
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTACCTGACCTTCCTCATGGTGGTGACAGTGGTGATTGTGGTGAACGCCGTCATCGTCCTCAACGTCTCACTGAGAACACCCAACACTCACTCCATGTCTCAGAGGGTGCGCCAG
Seq A exon
GTACCTGTCTCCATCCTCCTGCCCCATGGGAAATGGGGTCAATATCTGTGGTCCCCCCCGTGGACTGGGGTGGTCCCCAGGGGACCACACAGTGCCACCAAGCTACTGAACATTGGGGAGCAGTAGGTGCCCATTGGCACAAGGGTACCCTAATGGGATGCTCCCCAATGGGGGGAACACAATCACACCTGGGCAATTTGGGTGGGTCGTGTCCACGTTTCCAG
Seq C2 exon
GTGTGGCTGCACCTCCTGCCCCGCTATCTGGGCATGCACATGCCAGAGGAGGCCCCGGGGCCACCGCAAGCCACCCGGCGACGTAGTTCCCTGGGGCTGATGGTGAAAGCTGATGAGTACATGCTATGGAAAGCCCGGACCGAGCTTCTCTTTGAGAAGCAGAAGGAGAGGGATGGACTGATGAAAACCGTGCTGGAGAAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906:ENSGALT00000012833:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.6=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(28.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACCTTCCTCATGGTGG
R:
AGTCCATCCCTCTCCTTCTGC
Band lengths:
292-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]