BtaINT0038728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98815010-98816205:-
Coord C1 exon
chr11:98816097-98816205
Coord A exon
chr11:98815603-98816096
Coord C2 exon
chr11:98815010-98815602
Length
494 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
GATCTTCTGACCCTTCCCAGCTC
3' ss Score
6.59
Exon sequences
Seq C1 exon
ACCAGGAACCTCCCCAGTGCCCAGATGACATCGCTAAGGAGAAATGCACTCCAGCACTTGAGCCTGAGTCTTGTGAAGCCTCTGAGCCGCCAGCTAAAAAGTCAAAGAG
Seq A exon
GTAACTGAGGCTGAAAACCTGCCTGGTACCCAGGTGTTCTCTACCCTCATTCCTGCAAAGGCAAAGGGTAGGGGTAGGTGGGGTGAGATCCTTCAAGGGAACAAGGCAAGGACCTTGGTTTCTGGCGTCGGGGGAGGTCAAACCTAATTTTGCATCTTGCCTGGGAAGGCCCTTGGCCAAATGGACTCTGGCTTCTTCACTGTGACTGGGCCACAGTGAGGTGAGGGGGCCATTGTGGAGGGGTGAAAATGTGTACTTGGAACCTCAGAGCATGGCCAGAGGGTAGGCAGGCTTCCAGGGCCTTGAATACATACTAGCAAGCTGTGGGAGGTGGGAGCAAGTGATCAGTTTGCTTAGAGGAAGCTGGGACCTGGAGAGTCTAAGGGGCTTGCGTGTACATGGCAGAGCCAGGACTGGAGCCTAGGTCAGGGCCTTTCTTGGGAGCCCCTGGGGCCAGTTGGCAAACATGAATATGATCTTCTGACCCTTCCCAG
Seq C2 exon
CTCAGAGGAGCCCACAGAGAAGGGGCCCCCAGGGCAGCTGCAGGCAGAGGTCCGTCTGCAGACCCGGATGATGGCACCCAAGCAGACACAGACACCCGAGCTGCTGCCTGAGCCCCTGGAAGCCCACGTGCAGCCACGATTTCAGCCCCAGGTCCTGCAGATCACAGCCCAGGTGCAGCCACAGACGCTCCCCGTAAATGCCCAGGTGCAGCCAAAGCTACAGAAGCAGGCACAGACGCAGACCTCTCCAGAGCACTCAGCACTGCAGCAGGTGCAGCGGCAGCCGCAGGAAGAGGCAGAGCCACGACGACAGGCGCAGCCGCAGCCCCCCAGGCACGTGCAGCCGCTGCTACAGAAGCAGGCACAGACGCAGACGTGCCCACAGGTCCAGGCGGAAGCACAGCCGAGGCTCCAGCCGCCGGAGCAGCCACCCAAGCAACCTCTGGTTCAGTTACCGGTGCAGCCACTGGAACCGGCCCAGGGACAGCCTCAGACTCAGCCACAGGTGTCAGTGCCAGCGTCAGAGAAAGCCCCAGTTCTGGTTCGCTCTGCAGCGCTGGAAAGATTGCCTGATACAGTAGAAGCTAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGATGACATCGCTAAGG
R:
TGAGTGCTCTGGAGAGGTCTG
Band lengths:
350-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development