HsaINT0035585 @ hg19
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130941352-130942802:-
Coord C1 exon
chr9:130942694-130942802
Coord A exon
chr9:130941695-130942693
Coord C2 exon
chr9:130941352-130941694
Length
999 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
TTTTTTTTGATCCTTCCTAGCTC
3' ss Score
8.12
Exon sequences
Seq C1 exon
ACCAAGATTTACCGCCCTGCCCAGAGGACATCGCCAAGGAAAAACGCACTCCAGCACCTGAGCCTGAGCCTTGTGAGGCGTCCGAGCTGCCAGCAAAGAGATTGAGGAG
Seq A exon
GTAACTGATGCTGAAAACCTGACCTGCGCCCGGGTGCCCTGTGCTCTCATTCCTGCAAAGGCAGGGGTGGCAATGGCAGAGGGGGTGCACCATTCAGTGGAGCTGGAGCAAGGAAAGGGCCTTGGCCTCTGATTTGGAGGAAGGCCTTACTTATTTCCGCACCTGACCTGGGGAAGCTCCCAGCCAGACTCTGGTGTCTTCCTTGAGACTGAGCCACCTGGGGGCCAAGCTGGATGGCTGCGTGGGAGGGGTGAAGACGTTCATCTGGGACCGTAGTGGGCAGGCCATTTACAAAGCCAATTGGATACATGTCAGCAAGTTGTGGGAGGTGAGAACGATCCTCCCCGGTTTATTTAGGTGAATCTGAGGCCTAGACAGCCAAAGGAGTTTGCCCAAATCCCCAGCCTGTAAGTGGTAGAGCCAGCATTAGAAACCAAGTCTTGGGCTGTATGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTTGGGAGTTTGAGACCAACCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAGTACAAAATTAGCTGGGTGTGGTGGCGCATGTCTGTAATCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATCGCTTGGACCTGGGAGACGGAGGTTGTGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAACAAACAAACAACAACAAAAAACCAAAAACAAACAAAAAGAAACAGTCTTGGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGGTTTCACCATGTTGGTTAGGCTGATCTGGAACTCCTGACCTCAAATGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGTTTACAGATGCGAGCCACCACGCTCGGCCTAGTTTTGGCCTTACTTGGGAGCCCCTGGGGCCTCTTTGAAGACATGACTGGGATTTTTTTTTGATCCTTCCTAG
Seq C2 exon
CTCAGAAGAGCCCACAGAGAAGGAACCTCCAGGGCAGTTACAGGTGAAGGCCCAGCCGCAGGCCCGGATGACAGTACCGAAACAGACACAGACACCAGACCTGCTGCCTGAGGCCCTGGAAGCCCAAGTGCTGCCACGATTCCAGCCACGGGTCCTGCAGGTCCAGGCCCAGGTGCAGTCACAGACTCAGCCGCGGATACCATCCACAGACACCCAGGTGCAGCCAAAGCTGCAGAAGCAGGCGCAAACACAGACCTCTCCAGAGCACTTAGTGCTGCAACAGAAGCAGGTGCAGCCACAGCTGCAGCAGGAGGCAGAGCCACAGAAGCAGGTGCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-CIZ1:NM_001131015:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.993
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGCCAAGGAAAAACGC
R:
AGTGCTCTGGAGAGGTCTGTG
Band lengths:
352-1351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)