BtaINT0039156 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004293 | CLEC12B
Description
C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:HGNC:31966]
Coordinates
chr5:100369554-100371509:+
Coord C1 exon
chr5:100369554-100369652
Coord A exon
chr5:100369653-100371290
Coord C2 exon
chr5:100371291-100371509
Length
1638 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
GTTTGTCTTCTGTCTTGGAGTTT
3' ss Score
-4.08
Exon sequences
Seq C1 exon
GGTATCCAGCTCCATCCTCTATATGGCGTCAGGCTGCCCTGGGTCTGCTAACTCTTTGTGTGATGCTGCTGATTGGGCTGGTGACCTTAGGAATTATGT
Seq A exon
GTAAGTGTGCTTGCATCAAACTCAGGGCAAGGGGTTAGGAAATATAGCTGTAAACTATATAAATTTAGATTGGATTATATTAATATGATGGGTGCTAGCATCATAAACCCTTTAATACTTTCTGCCACCTCAGCTATCTCTCATTCTCTATGCCTCCAAGATAAACCTGAAAATTATGTACTTCATTGTTATGAGGATTTTGCCCTGAATACATGGTTTTCTCTTGACAAACTAGACTATGAAGACAATTTTTATTTTTCTATTCTTTTTTCTTTTTTTTTTTCTAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCGCCACAGGTATACATGTGTTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGACGTCCCAGTACACCAGCCCCAAGCATCCAGCATCGTGCATCGAACCTGGACTGGCAACTCGTTTCCTACATGATATTTTACATGTTTCATTGCCATTCTCCCAAATCTTCCCACCCTCTCCCTCTCCCACAGAGTCCATAAGACTGTTCTATACACCAGTGTCTCTTTTGCTGTCTCGTACACCGGGTTATTGTTACCATCTTTCTAAATTCCATATATATGCATTAGTATACTGTATTTATGTTTTTCCTTCTGGCTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTATACGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTTGCTTCCATGTCCTGGCTATTATAAACAGTGCTGCGATGAACATTGGGGTACATGTGTCTCTTTCCCTTCTGGTTTCCTCAGTGTGTATGCCCAACAGTGGGGTTGCTGGATCATAAGGCAGTTCTATTTCCAGTTTTTTAAGAAATCTCCACACTGTTCTCCATAGTGGCTGTACTAGTTTCCCACCAACAGTGTGGGAAACTCCACACCCTCTCCAGCATTTATTGCTTGTAGACTTTTGGATCGCAGCCATTCTGACTGGCCTGAAATGGTACCTCATAGTGGTTTTGATTTGCATTTCTCTGATAATGAGTGATGTTGAGCATCTTTTCATGTGTTTGTTAGCCATCTGTATGTCTTCTTTGGAGAAATGTCTATTTAGTTCTTTGGCCCATTTTTTGATTGGGTCGTTTATTTTTCTGGAGTTGAGCTGTAGGAGTTGCTTGTATATTTCTGAGATTAGTTGTTTGTCGGTTGCTTCATTTGCTATTATTTTCTCCCATTCTGAAGGCTGTCTTTTCACCTTGCTAATAGTTTCCTTTGATGTGCAGAAGCTTTTAAGGTTAATTAGGTCCCATTTGTTTATTTTTGCTTTTATTTCCAATATTCTGGGAGGTGGGTCATAGAGGATCCTGCTGTGATGTATGTCGGAGAGAGTTGAAATAAAAAGGCATCAGTTGTGTTTTTTCCGTGATACCTGATTAGAGACTACTAATAAATATTAAACCTAAGCAATGTTTCTGTGTTAAGAGAATTATCTACAGCTGTCATAAAGAATGGAAGGATATATATGAGTTTGTCTTCTGTCTTGGAG
Seq C2 exon
TTTTGCAGATGTCCAGCGAAATTAACTCAGATTCAGACAAACTGACTCAACTCCAGAAAATCATCCACCAACAGCAGGACAACTTATCCCAGCAGCTGAGCAAGTACAGGAACTTTCCTGTGGAGGAGGAATTTCTCAAATCACAAATCTCCAGTCTATTGAAGAGGCAGGGACAAATGGCCATCAAACTCTGCCAAGAGCTAATCATTCATACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004293:ENSBTAT00000030535:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(23.0=82.4)
A:
NA
C2:
PF083915=Ly49=FE(59.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCCAGCTCCATCCTCTA
R:
CTGAAGTATGAATGATTAGCTCTTGG
Band lengths:
318-1956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]