HsaINT0036117 @ hg19
Intron Retention
Gene
ENSG00000172322 | CLEC12B
Description
C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]
Coordinates
chr12:10165384-10167340:+
Coord C1 exon
chr12:10165384-10165482
Coord A exon
chr12:10165483-10167121
Coord C2 exon
chr12:10167122-10167340
Length
1639 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
TCTCCTGTCATGTCTTGGAGTTT
3' ss Score
-4
Exon sequences
Seq C1 exon
GGCATCCAGCTCCATCTCCCATTTGGCGTCATGCTGCTCTGGGTCTGGTAACTCTTTGCCTGATGTTGCTGATTGGGCTGGTGACATTGGGGATGATGT
Seq A exon
GTAAGTATATCAGCATCAAACCCAACAAAGGCAACTAGAAAACATATTGTAAACCATGTACTTTCAGCTTGGATTGTAGATGGGTCCTAGCATCCTGAATCGTCTGATACTTTTCTGCTGTCTCATATCTCTCCTATTCGTCATATCTTCCCAAAAAACCGGCAAAAGACATTATCAGGATTTGGTTCTAAATTCATTGTTTTATCTTGATAAGCTAAACTGGACTTAGACAAAGACTCTTTGTTTCCAGTTATTCATTAGAATAAAGAGCCTCTTTTCTGCCTAGACACACATTCACTTATCATTCCAATGCTGAGAAATAAAGTCAAGAAATATGTATTGAAGGAAGTGCTTGCTATTTTTATTTACCTGAAAGACTTAACACTAGACTAGGTTCAGTCTGCTTACATGAAACTTCTCTAGTGGAGAGAAATCTTCCAAGTAGCAGCAGCAGCCTGATTTCTATGAATGAGAAAGACATATAAACAAAGAGGAAGAGTGGCCTGATACACCTTACCAAGTAAGAGAGTTGAACCATCTCCACATGACAATGGAAGCTCCACTCTCAAGCACCACAGCCACAAAGGAACATTCTATTGATTCTGACCCATCCTCGGGAAGTTGGGGATGAACATGGTAGGGAGTTCTTGAGTAATGAGAAAAACATCCTGAGAATACAAACTTTATAGGGTTGTTAAGTATATGGTATACAGAGTAGTGAATTGGCATGGTATTCGCTTACAGGGAACTCACAGTCAAGAAAGTTAATTTGCTGAATGATACTAACATCTCCTCTGCTACATTCATTTCTTTTTAATGATTTAATGGATAATTTTTTAGGATTTAATGGTTAATTAGGATTTGGACATATCTTTGCCAACATAAAAAGAGACTAATGATGTACCTTGCTCTTTTGAAAAGGAATATGATGTTCAAGCAGCAGTAACAGATATTCTGGAGCCAATCAGTATGAGGATTAGCAGCCGATCTTCTACAATAATGTATATTTAAAAATTAAGTGAAAATGCAATAACGTACGTCCATTGGTTCGATATAGAAGGGTGACATTTCTTTTCTAAAATTTAGTGCTTTTGGTGCAGTGGTTCTTAAATTTGTTGTGCTGATGAAGCACCTTAAATGCTTATGAAAAGGGCATATTTCATGGACCCATGACGAGAAATGGTCTGATATGCCATTAAGATCTGCTTTTTCTTTTCTTTTGGTAAACAAGCATCTCAGGTCATCTGCAGAGTTTGAGATATCCATTGTCCCAAAGAATGCTGTTTTCATTAAAACAACAATTACATCATCTATCTCCAAATAAAATAAAACAAAAATAAAACAATTTCATGAAAATGAGTGGCAGAATGACTGGCCCTTCCTTAGATGTGATGTCAGAAATATATCATTATTAAATCATTATTTTAATATAGTGCAATAATAAAAATGTAAATAAAATTATAAAGAACTATAAATAATTTGGAATAGAAAGGCATCTGGTTTGTTTCTTTCATGATACCTCAAATACTAAGAGCTACTAATAAATCTTGAACAATTAAGAAATGTTTCTGTCACGAGAATTATCTACAGTTATAAGAATAGAAGAATATATGAACTTGTCTCCTGTCATGTCTTGGAG
Seq C2 exon
TTTTGCAGATATCTAATGACATTAACTCAGATTCAGAGAAATTGAGTCAACTTCAGAAAACCATCCAACAGCAGCAGGATAACTTATCCCAGCAACTGGGCAACTCCAACAACTTGTCCATGGAGGAGGAATTTCTCAAGTCACAGATCTCCAGTGTACTGAAGAGGCAGGAACAAATGGCCATCAAACTGTGCCAAGAGCTAATCATTCATACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322-CLEC12B:NM_001129998:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCAGCTCCATCTCCC
R:
CTGAAGTATGAATGATTAGCTCTTGG
Band lengths:
318-1957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)