BtaINT0039254 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039980 | CLECL1
Description
C-type lectin-like 1 [Source:HGNC Symbol;Acc:HGNC:24462]
Coordinates
chr5:100768517-100771801:+
Coord C1 exon
chr5:100768517-100768615
Coord A exon
chr5:100768616-100771628
Coord C2 exon
chr5:100771629-100771801
Length
3013 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
TTTATTCTTTTTCCTTCCAGTTT
3' ss Score
10.19
Exon sequences
Seq C1 exon
TTATTCAGTTCAAATCTGCAAGACAAACTGAAGTGGATAATGAATTAAAGAAGAAATATTGTACTGAGCAAAGTAAATCTGAAGCAAACAACTCAATAG
Seq A exon
GTAATGTTATTTTATATTGCCTAATTCTTGAGTTGACTATGATGGCTACTCCATTTCTTGTCAGGGATTCTTGCCCACAGTAGTAGATATAATGGTCATCTGAGTTAAATTCACCCATTCCAGTCCATTTTAGTTTGCTGATTCCCAAAATGTCGATGTTCACTCTTGCCATCTCCTGTTTGATCACTTCCAATTTGCCTTGATTCATGAACCTAACATTCCAGGATCTTATGCAATATTGCTCTTTACAGCATCAGACCTTGCTTCTATCACCAGTCACATCTACAACTGGATGTTGTTTTTGCTTTGGCTCTGTCTCTCCATACTGTCTGGAGTTATTTGTCCACTGATCTCCAGTAACTTATTGGGCACCTACTGACCTGGGGAGTTCATCTTTCAGCGTCCTGTCTTTTTGCCTTTTCATACTGTCATGGGACTCTCAAGGAAAGAATACTGAAGTGGTTTGCCATTCCTTTCTCCAGTGGATCACATTTTGTCAGGACTCTCCACCATCACCCGTCCGTGTTGCGTGGCCCTACACGCATGGCTCATAGTTTCACTGAGTTAGACAAGGCTGTGGTCCATATGATCAGATTGGTTAGTCTTCTGTGATTGTGGTTTTCATTCTGTCTGTCCTCTGATGGAGAAGGATAAGAGGTTTATGGAAGCTTCCTGATGGGAGAGACTGACTGAGGGGGAAACTGAGTCTTGTTCTGATGGGCGGGGCCATGCGCAGTAAATCTTTAATCCAAGTTTCTGTTGGAACAACAGACTGGTTCCAAATCAGGAAAGGAGTACATCAAGGCTGTATATTGTCATCCTACTTATTTAACTTATATGCAGAGTGCATCATGAGAAATGCCAGGCTGATGAAACACAAGCTGGAATCAAGATTGCCGGGAGAAATATCAATAGCCTCAGATATGCAGATGACACCACCCTTATAGCAGAAAGTGAAGAAAACCTAAAAGTCTTTTGATGAAAATGAAAGAGGAGAGTGAAAAAGTTGTCTTAAAGCTCAACGTTCAGAAAACTAAGATCATGGCATCCCATCCCATCATTTCATGGCAAATAGATAGAGAAACAGTGGAAACAGTGGCTGACTTTTTATTTTGGGGGGCTCCAAAATCACTGCAGATGGTCACTGCAGCCCTGAAATTAAAAGACGCTTGCTCCTTGGAAGAAAAGTTATGGCCAATCTAGAGAGTGTATTAAAAAGCAGAGACATTACTTTGCCATCAAAGATCCATCTAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGACCATAAAGAAAGCTGAGCACCAAAGAATTAATGCTTTTGAACGGTGGTGTTGGAGAAGACTCTTGAGAGACCCTTGCACTGCAAGATCCAACCAGTCTATCCTAAAGAAAATCAGTCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAACTCCAATATGTTGGCCACCTGATGTGAAGAACTGACTAACTATAAAAGACCCTGATGCTGGGAAAGATTGAAGGCAGGAGAAGGGGACAACAGAGGATGAGATGGTTGGATGACATCATTGATTCAATGGACACAAGTTTGAGTAAACTCCTAGTGTGGGTGATGGACAGGAAGCCTGGTGTGCTGCCGTCCGTGGGGTCGCAGAGTCGGAAATGACTGAGTGACTGAACTGAACTGAACTGAACTGAATTCCTGAATAAGCAAGTGTGGACAGTAGCATGTATTTTACTTGGGTATATCTGAATAAAGGGGAAATTCCTCTACCCCTACATAGGCATGGTTTAGACCATTGTTTTTCATGGGCCTATTACAGTTCTTGACAAAACTGTTTAAAGACTGAAGACAAATGAGAAAAATAAATTTGTATGTGTTTTAAATGAATTTAAAGGTACTATGTTGAAATCATTTTATTAGTATTTTTATTTCTACTGGGACATGTGCAGGTGTACAATATGGTAAAAAATATTTTCTTTCCTAAAATTCATGATCACACCACATAGCTTTTTGTCAGTTTTTTAATGGCACTACATGAAAAATGTTATAAATGATTATTTTATGCGTTTTTATCTTTCACATATTTATATATTTTTAAAAGTCAAGAAAACACTCAATTATTTAGCTTTTCTGTTTTCTTTTTCTTTCTGTTTCCTTTATTATTTTTAATCTGTTGATTTAAGTTTTTATTCTATATTGAAAAACTATATTCCTTTCTTTTTTTGAACCCGCATATATAATGTTATTAGAAAGACTTACCAGTCCATGTTATAGAGTAATTTCAACTTCTGGGAACTCATTAAAACTTTAAAATGGATTTTAATTTTTCCAAGTCTCCTCAACCTCATTCCAAAAACTTTAATTTTTTTAAACTAGTGAGACTATGATAGCAAATTTTCTGGGACATTATTCCCAACACAAAAGCACATTGTCCTCCTTCTACCCTTGATAGAGGTGGTAACATGGTGTTGAATAAAATTGCTTTAAATTCTGTCCAGACCCTTTTATACATAGGAAGATCAATCTATCTGAGTTTTAGAGATCACCTATCATACAAATTTTGCCCAATAAAAATTCTTCTCATGATTTTATCATTCTCAAAATTATAGTGATACATAATTCTCAAAATGTCTGGTTCATTGTTGAAATCACTAGTTGAAATCTCTAATTTCTACTTTTCCTCCCAAATTTTTATCTTCCTGAAGTTTGGATGTTGATCGCTTTATCCTAGTGTCTGTGCATTGCCTAGCTCATAGAAAACATAACATATTTTAAAGAGAATAAATTAAATGGGAGAAAGAAGAAAAGAGAGAAAGAAAAAAAAATACAATTGAAATTCTGTTAGGTTTTATTTGTTTCAAAATCCATCCTGAGAAAAGCACATACTTTTGTCAAAGAAGCTTAGGCCATAATTTAACAACTTTTGAGAGGCATTAATTATTATGCAATATTAGGGATGCATTCTCATGTTTCTTTTAATTATTTATTCTTTTTCCTTCCAG
Seq C2 exon
TTTCTTTCAATTCTTCCACTGTTCATACATCATGCCCCACCAAAGATTGGAAGCTACATGGGGGAAAATGCTACTGGGTTGCTGAACATGAAAATAAATCTTGGAATGAAAGTAAAAATGACTGTGTCACGAAAAAATCACATCTCATGGTGGTCCGAGACTTCACTGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039980:ENSBTAT00000052038:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF113683=DUF3169=FE(34.4=100),PF074236=DUF1510=FE(28.2=100),PF150691=FAM163=FE(27.5=100)
A:
NA
C2:
PF113683=DUF3169=PD(11.5=19.0),PF074236=DUF1510=PD(40.2=81.0),PF150691=FAM163=FE(47.5=100),PF0005916=Lectin_C=PU(27.3=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]