BtaINT0040786 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7302660-7303166:-
Coord C1 exon
chr23:7303113-7303166
Coord A exon
chr23:7302768-7303112
Coord C2 exon
chr23:7302660-7302767
Length
345 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCTCTAACCCTCTCCTCCAGGGC
3' ss Score
9.78
Exon sequences
Seq C1 exon
GGCGAGGATGGCTTTCCCGGCTTCAAAGGGGACATGGGTGTGAAAGGCGACAGG
Seq A exon
GTGAGTAGAGACCTCCTCATTGCCCCCAACTCTGAGCGCTGGTGACCCTCCCCTTTGAGCCCCAATTACCAGCCTCCCCCTGACACCCCTGGATGGCCCATCTCCAGGCTCCCTCGAGGATCTGACCTCCCTTTGGAGCCCGATCCAAGCAGGACCCAGCCCTGTGCTCTGTGACCCACCGGCTGGCTGGTCACCGCCCTCTCCCTGCCCCTCGGGGCTCCTTGTCTTGCAGGAACTTCAGGGACCCCCACCGACCCCACCAGCCTCACCAGGGCCTGCCCCCCATCTCGGGGCTCAGCTCCCACCCCGAGTCCCGATCTCTCACTCTCTAACCCTCTCCTCCAG
Seq C2 exon
GGCGAGGTCGGAGTCCCCGGTTCCAGGGGCGAGGATGGTCCTGAGGGGCCGAAGGGGCGCACTGGACCCACGGGGGACCCTGGGCCCCCGGGGCTCATGGGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601:ENSBTAT00000000793:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]