BtaINT0041938 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61103878-61104774:-
Coord C1 exon
chrX:61104712-61104774
Coord A exon
chrX:61103914-61104711
Coord C2 exon
chrX:61103878-61103913
Length
798 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TCTTTTCTCTTTTAATCCAGGGT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GGCCCACAAGGAGCACCCGGATCTCCAGGAGCTGTAGGACCCAGAGGACCACCAGGATTGCAA
Seq A exon
GTAAGACTGGCCTAAATCTACCATGTGATCACAGCATTTGCATGAATGCTTTCCCCTGGATTAAAAGCCTATGTAAATGTAGGCCTTCCTAGCAGAGAAAGGCAGTTTCCGTTCTTAGAGGTTTAAGTGAAGCATGTTCTTATAAGGAGCTATTTGTAACCTGTATTTATCAAAATCTCTGACCATCTACTCTGGGCCTCCAAAGTCTCCTAGTCTAGCTCAACCTAAAGTATAGCCCAAGGATGGCTAATACCCAGCACATCTATTGTGACCTTCCATTCCCCTCATCCATGATAGACATTGCTAATTAATCATACCACCAGCATCATCACCCACCCTCAGCACAGAAGCAACTTAAAAATCTTTCTCAACACTTCACCTTGGAGAGCTCTTCCCACATACCTATTTGCCATCACTGGTTCTAGGAAGAACATAGCCAGTTAGCTGTGTGGTACCCAGAAAGCCTCTCTCCAGTATGTGAAAACCCACCCCTGATTAGTTTGATTTACTTTCACCAAAAGTCATCATTTAAAACTGTCGGGCCTAATGGGAAGAATGACACATGAAGTCAGTACCTTAGCATGACTGTGATTATCAGGTCAACTGGGGAAATTTCAAAGGAGATTAAAAAAAAAAAAAAAAAAAGGAACTCTGGGGAGAAGGAGCTAGAATCTGCTATACCAAAACAGGGCCACACCATGCCGGTAGGGGACTTACCCTCAGTGACTCTCAACATGACTAGGTTCTTTGGGGCTGAAACTAACAAGAGTTAACTCTTTCTTTTCTCTTTTAATCCAG
Seq C2 exon
GGTCCTCCTGGCCCCCCTGGTTTCCCTGGTCCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760:ENSBTAT00000018292:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.9=100)
A:
NA
C2:
PF0139113=Collagen=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]