BtaINT0042500 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012678 | COLGALT1
Description
Bos taurus glycosyltransferase 25 domain containing 1 (COLGALT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098955]
Coordinates
chr7:5476582-5481783:-
Coord C1 exon
chr7:5481664-5481783
Coord A exon
chr7:5476659-5481663
Coord C2 exon
chr7:5476582-5476658
Length
5005 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CGGCTTTGCTGCCCCCCCAGTGA
3' ss Score
6.04
Exon sequences
Seq C1 exon
AGGTCCAGATGTACGTCTGCAACAAGGAAGTGTATGGCTTTCTGCCGGTGCCACTGCGGTCACACAGCACCCTCCAGGACGAGGCCGAGAGCTTCATGCACGTGCAGCTGGAGGTCATGG
Seq A exon
GTGAGTCTGTGCGCACCACCCCAGGAGGGCCACGTTGTCTCCCTCTCCCCACCATCTCTCATCTATCCGTGAACACTGATTGAGTGTCTGTTGGGCATCAGTCTTTTTGCCAGGCACTGAGAATCCAGTGTGAACAGTTGTCCCCACTCTTATGGCTTGCAAGCAGCTATGCATGGCACGCTTGGGGAAATCAGGGTGAACTTTCTGGTGGGGGTGGCATTAAGATCCAGGGTGAGTTAGCTGGAAGGGAGATTGCAGCCGGAGGGAGCAGCACGTGCAGGAGCTGGGCAGCTGGAGGGGCTGTGAGCTCAGAAAACAGGCAAGGTTGGTGGGGCAGAAGGGGTACAGAGCCAGCAGGCAGGGCCACGGTGGGGGCATCAGACATTGGACTTAGGAGTAGGTCTTGTCCCCAGGGGTAGGCAGGAGCCGTGGAGGGTGTGGGAGCACGGGAGGTAGGAGGTTTCACTGATGACCCTGCGTGCATGGCCGGGTCAGCCATTTCATCACCCATGCCCCTGCCAGCCCCCAGACCCACTGTTTGTTTAATGTTTATCTTATCGGACACTTTCTTTTATTTGAATACACTTTGAAAAGGAAACTTTAATATGTATTTTTACTGTGGTTACAAGCTGATGTCTTTCTAATGCATATACAAATAAATCCATAGGCTATTATGTTAGCACCTGTACCTCTGGTGAGGTGGGCTGAGTGCGCAGGGCTGAGTCACCATTGAGGCTGCTTGAGGAAGGGGCCTCTCCCCCAGCTGGGGAGTCTCTGAAGCAACCAGACAATGGAGCAACATCCTCTTCTGTGGGGGCCTGGCCCTGTGCTGAGCACCCACTTCCCTGTGAAGGCCTGTGAAGCAGCACAGCGATTCCTTCCACTGCACAGAGAGAGGATTGGAGGGCCAGGCCCCTGTCACGGGGCTCAGTCCTCATCACCCCGTCCATTTCTAGAAGGTTCTGTCTATGGCTCCCCCTTGTGGTTGAAGATGGAATGACACTCTGCTCTCTGGAGGGGGCTTTGGGGTCTTCCCTGGTGGTTCAGATTGTAAAGAATCTGCCTGCAATGCGGGAGACCCAGGTTCGATCCCTGGGTCAGGAAGATCCCCTGGAGAAAAGAATGGCTACCCACTCCAATATTCTTGCCTGGAGAATTCTATGAACAGAGGAGCCTGGCGGGCCACAGTCCACAGGGGTCACAAAGAGTCAGACACAACTGAGCGACTAACACTTAACACTTTGGGTCTTCTGAGATAACACCTGGAGGCTGCAAGGTCACCAGGGCGAAGACCCCCCCACCCTGCCCCCAACACCCAAGTGTCTGTCCCATGCGGTTGTCCAGGCCCAGGATGGCAACCCCACCATAGTCACAAGAGGTGGGTCTCTGCTTATTGCCAACTCCTTTCTGTGACTGGGCCCTGAGAAGCTTCTCTGTGGCTACTATCAATGGTCCTAGTTTAAATTTTCACATATATTCTTGTTTCTGGTTAGGAAACCGTTCACTCCACTGTTATAAACTCACACACAACAGAGGCATGAATATTTTCCTGTTTGAGGGCTCGAGCAGATCACGCAGGACAGATAGAAGGAGGGGGTCTGGAAGTTTCAGATATTTGTGCAAATCCTTCTTCACAGTTCTTGTGAAAACCATCTTTTCTCTCTACCTGTGTGTGGGTACCTGGTCCCAGGCTATGCATGTGATTTTACATGTGTTCAAAGATCTTTTTACAATAAAATTTCAAGCTTACAGAAAACCTCAGAGAGATGCCCTCTGTTTATGGGGAATCCAGCAACTTGCTTCCTTCCCTGCCTGCTCATGGGGTGTCTTTCCCAGTTGGCCCCATACACTTGGCTCAGTATAAGGGCTGTTCTCTGAGTTTTAGCACACAGAGCAGTAACGGGTCATGGGTGTGCAGTGTGATGATTGTTTTATATCCCTTTATATCCAGATGCAGACCAAGCCCTGACCCTCCCCAGTGTCCCCACTGAATCCACCAGCTGACTGGCTTTCCCATTTTGTGCTTCACATCAGTGGAATCACACCGTGTGCTGCTCAAGCGTGGTGTCGTCCACGCAGCGTCCCTGTCTGCTGCCACTGGCTGCTGAGTGTGGCTGTGACTCATTCCCTTGCCTTGCTGTCTCGTACTCCATGTAGATGTTCAGCTACAGATTTATGTACTCTTGGCTGTGCCATATGTCACTTCACCCATCTTCTCTGGGGCATGTAGGGCATTTCTTGTTTGCCAGCATTGCAGAGAGTTCTAGACATGCTTCTGTGGGTGCAAAGTTAGGAGATACCTACAAGATTGCTCTCACTTCTTACATCAGGAGTCCCCAAGAACATGTTCAGGTTGGATAATCCACTAGAAGTACTCAGAGCTGAAGCTATTAAACTCACAATTTATTACAGCAAAAAGACACAAATTGCCATCTTGGCAAAGGGAAAAGGCGTGTGGGGCAGCGTCCAGGAGCATTCCAAGCACAGGGACTCCTGGGGTCCGTTCTCTGTGGAGTCGCGTGGACAGTGCTTGCTTCTCCCAGCACCAGCGCGTGACAACACGCATGGTGTACTTCCAGCCAGGCTGCTCCCCGAGCCTCTGCATCGAGGGCTTATGCTGGGGCTCTTACAGATACAGCTGACTGCCACGTGGCTGACCCCCATCTCCAGTCACTGTAGAGACTGAGCCAAGACCCCCACCCTAAATTACACTGTTGGCATAGATACCCACTATAGCCCAAGGCCTGAAATAAAGATATTTCCAAGGTCTTCAACTACCCAGGAGCAGAGAGCAAAGGCCAGACTGCTCTGTGGTCAAGTTTAATCCTTCACCCTATAATAGGTCTAGCAATGTTACAATTTTTTTTTTTTCTTTGACTGCGTCTGGTGTTAGTTGCAGCCTGTGGGATCTTCCACGGTAGCTCACGGGCTTTGTAGTTGCCCGTGTGCCAGCTTAGTTGCCCCGAGCATGTGGGATGTTAGTTTCCCGACTAGGGATTGAACCTGCATCCCCTGCACAGGAAGGCGGATTCTTAGCTACTGGACCACAGGGGAAGTCCCTAGGGGTGTTGCATTTTTCTATCACTGTGACATAGCTGCATTGCCTTGTTCTTTCTGGACTTTAATATGTTCCATTTCCCCAGAACTGGTAAGACAGGATAAAGAGATACCTCCACTTCCCACAGGCAGATCCTTCCCACACGTACACCCCAAGGAGGCAGGCGGAGACTGAGAAAGAGAGGGAAAGTGCTTTGCAGCCGGATTCTCAGATCCCAAAGCCTTGCCCTTTTGGGTCCCAAGGTCCCCTGAGGATGGCAGCAGGTGGCAGGGAGCTGTGATGGGCCCCGAATAGGAAGAAGCCCCAGGGTGCAGTGTCCCTAGAGGAGGAGGCCCAGGCTTCGAGGTGGGAGGCTCCGGGTGGACTCTGGGCCTCACCCAGGCCTCTCCCAGACAGAGGGGCCTGTGTCTGCCCTGCTAGCTCACACGGGGCCTTTGTTCTTGCGGAGGTGGATGCTACACTCACTGGCATGCTGGGCTTTTCTGGGCCTCAGCAGGCTCACAGTCCCCTGTGGATCTATTCCTTCTATGGGAAACCATCAGGGATGGGCCGAGACAGGGCCCTGGGGATGTGGTTTGAGCACTGCCCACAGCAGCTAAAAGGGGAGTGATCATGACCACCCTGAGCTTCGTAGCATCCCTGGGCTTGGAGGTGTGTCACTCCAGTCACACGGCACCAGCTCCCTGTGCATCTTCACCCCGTGTGCCCTCCATGGAGGTCTCTGTGTCCAGATTTCCCATTTTTATAAGGACCCCAATCATACTGATTACATGCCACGTGTATATGTTAGTGGCTCAGTCGTGTCTGACACTTTGTGACCCCATGGACTGCAGCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTAGCCATTCCCTTCCCCGGGGGATCTTCCTGACCGAAGGATCAAACCTGTCTCCTGCACTGCAGGCAGATTCTTTACCGCCTGGGCTACCAGGAACGCCCATATTGATTAGAGCCCACCACCCTAATGACCTCATTAAAGATCCTATTTGTAGATAAGGTCACCTTCTGAGGTACTGGGGATCAAGATGCCAGCATATCTTTGGAGGGCGGACACAATTTAACCCAAAATAACATGTGATTTCATGGGATCGTCTCATGATAGAAACCTCTGAGAGGTTTTTTAGTCCACTTTCAAGATTGAGGGAAGGAGGAGAAGGGGGCGACAGAGGATGAGATGGTTGGATGGCATCCCCAACTCTAGGCATGAGTTTGAGCAAACTCTGGGAGATGGTGAAGGACCGGGAAGCCTGGTGTGCTGCAGTTCATGGGGTCGCAAAGAGTCGGACATGGCTGAGCGACTGAACAACAGCACAGATGAGGAATGTAATTCCTTTGCTTGTTTTATGAGTTTGTGCCTAGCTCCTTGTTGGGTGCCAGGGAGCCAACGTGGGTGGGTGGACCTGGTGTCCCTCTGGTGGAGCTCATGGGAGATAATCAGAGAATTGGGACTTAGAGCAGAATGAGGCTTTGCGGAATGAGGCTTTGATGGAAGGCCGGGTGCTGTGGGGGCCTCCAGAGAGGTACCTGACTCAGCCTGGGGAGGCCAGGAGACTCCTGTTGGTGCATCGCCCCCTACCCCAAGAAGACATCTTAGCTGGTAACTCAGGGAAAGGAAACAAGGGAGGAACAGGGTTTCAGCAGAGGCACAGCATGTGCAAAGGTCCAGAGGCAGGAAGAGGGGATGGGTAAGTCTGGAGCAGTGCCAACAGCCAGAGTGGGTAAGAGGCAGAGGAGAGAGACTGGCACTGCTTCTGTGGGCAGGGCTGGGTCAGGCAGGGTCTCTAGCATCAGGCTGAGGAGCCCGGGGTGACACGGAGCCATGCAGAGGTTGGGGAGGGGGCATCAGGAGCGAGGCTGGAGCCCTCCGTCTCCATGACCGCCTGGTGACCCCTCGGCTTTGCTGCCCCCCCAG
Seq C2 exon
TGAAGCACCCACCCTCGGAGCCCTCGCGGTTCATCTCAGTGCCTACCAAGACGCCAGACAAGATGGGCTTTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012678:ENSBTAT00000016841:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]