MmuINT0069475 @ mm9
Intron Retention
Gene
ENSMUSG00000034807 | Glt25d1
Description
glycosyltransferase 25 domain containing 1 [Source:MGI Symbol;Acc:MGI:1924348]
Coordinates
chr8:74143551-74144576:+
Coord C1 exon
chr8:74143551-74143670
Coord A exon
chr8:74143671-74144499
Coord C2 exon
chr8:74144500-74144576
Length
829 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCCTCCTTTCTTACTCTCAGTGA
3' ss Score
9.15
Exon sequences
Seq C1 exon
AGGTGCAAATGTACGTGTGCAATAAGGAGGTGTACGGCTTCCTGCCCGTGCCACTGCGTGCGCACAGCAGCCTGCAGGACGAAGCAGAGAGCTTCATGCACGTGCAGCTGGAGGTCATGG
Seq A exon
GTGAGTCTCCTTGGGCCCTGGCCTCATTATCATGCATGCATCTCAAGAACTAATTGGGTACTGTTGGGTGGCAGTTCCTGTGTGTGGTGTGTGACTGAGGGAGACCATAGTCCCTGCCACTAGGGAGTTCTACAGTAGTCACAGGGTCAGCTGTCATCCTGGCAGATGCTGCCATACTCTTGTGTGCCTGTGCCCTTTGGTGTCCCCACACCACTGAGAAAACTGAAACATGAGCTGCTGTCTGTGGCACATGCCTGCCAACTTGGCAGTCTGGAGGCTGAGGCTGAGGCCCTGCATCCTGGGCTATAGCTTGAGACCATAGCCAAAAAGACTGCTCTTGTTTTGCAGCAAAGTTATTCTGTTCCTGAGGGTTGGTATACCTGTGTCGCTTTTAGGGGGTCGCATTTGGAGGGACAGCAGCCAGTGTGAACCTCACTGCATTTGTGTAAAGCTTCTGAGAGTTTCACTGAAGTTATCACACATGCACTGCTGGGATAATCCCTATGCATCTATTGAGTGCCTGCTGTTTACCAGGCACTGTTGGGCTCTGGGCATGCAATGTGTGTAGACAGATCCCACAGCCCTCCCAGGATGTTAGAGATGGAGTTAGAAAAGCAGGGATAGTGTCCTGATGGCCAAAGCCTGACACTTGGGCCAGAAGAGCCTGACCGGTCAGAGAGGCCTGGAGGCTCCCACTGGCTGGGCTGTCACAGCTGAGATCTGAGTTGCTCTGGGCAGGAACGTGGCAGGGGTGAAGGTCCTGGGGCATACCCTGGTTATACTGGGAGCTGGGAGAAGGGAGCATTGACCCCTCCTTTCTTACTCTCAG
Seq C2 exon
TGAAACATCCACCAGTGCAGCTCTCCCGATTCATCTCAGCACCCAGGAAGACTTCTGACAAGATGGGCTTCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034807-Glt25d1:NM_146211:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCAAATGTACGTGTGCA
R:
CGAAGCCCATCTTGTCAGAAGT
Band lengths:
192-1021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: