BtaINT0043086 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6032431-6034633:+
Coord C1 exon
chr7:6032431-6032592
Coord A exon
chr7:6032593-6034490
Coord C2 exon
chr7:6034491-6034633
Length
1898 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
3' ss Seq
GGGCGTTGTCTGTTGCCTAGGAA
3' ss Score
4.98
Exon sequences
Seq C1 exon
GTTTTCCGGGAATTGGAAGATTATGATGTTTCTGATATCTTTGGGGTGTCCAGGGAGGATGGACCCTTCTGGTGGACTGGGCTCACGGCCCGACGACGCCGGCGCTCCTCTGTCTTCCTGTGGCCCTGGGGCGTCACCAAGGATTCCGGATTTGCCTTTGCT
Seq A exon
GTAAGGAGAGGTGGTCTTGAACCCCATCGTCCCCTTCTGAGCTCCTCTTCCTCTGAAACAAAGGGTCTCGGGGTGCAGGGTGGAAGTTTCCAAACTCTGAGTGCTGCAGAATCTTTTTGATTCTCCCCAGTGGAAGCTTGGATGCAGACCTTCCAAATTTGCAGAACAGATGAGAGCCGAATGAGTGTTCATTGATAACCTCAGCTTTGTTCTGGATCAAACTAGAACATCGTTCTGGAGCGATGACCTTGAAAGTGCTTTGGTGGAAGCAAAACCTTCACAAGGGCTTCCCAGGGGGCGCTAGTGGTAAAGAACCCGCCTGCCAATGCAGGACACATAGAGGTGTGAGTGTGATTCCTGGATCGGGAAGATCTCCAGGAGGAGGAAATGGCAACGAAGTCGTTTTCTTCCCTGGGAAATCCACGGACAGAGGAGCCCAGCAGGCTACAGTCCACAGGGTTGCAGAGTCGGACACGACAGAAGCAGCCTTAGCATGTGTGCACACCTTCACGATGTGTGTGGGTGCTGTGTTGTCAGTTGGCAGCCTTACCCTTGCTGACATTTATAGCTCTCATCCATCGCCTTCCGTCCTGGCTCCAGGGACCAGGGGGCTGCTGGGGGTGCAGTATCCCCAAGCGTCATTTCAGCCCACATGAGCATTCTGGTGGTCTCCACTTGAATGCATGAGGGCACTTTTCATCCCCGTTTTTAAATCATTTAAAAGGCATCCTTGGGAATTCCATGGTGGTCCAGTGGTTAGGACTCCAGACTTTCACTGGCTAGGGCCCAGGTTTAATTCCTGGTTGGGGAACTAAGATCCTGGAAACTGCATGGCACAACCAGAAAAGAAAAAAAAGACATCCTTTTCCTCCCATTTTTATTATGGAAATTTCTCAAAGATATAAAAAGTTGAATAAATTAGTAAACACCTGTAGATCCACCATCTTGGTGCCACAGTTAGCGTTTTGCTACATCAAATGCGTGCGTGCACATGTGCTCAGTCGCTGCAGTCCTGTCTGACTCTCTGCATCCCTAGGTCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGAAAGAATACTGGAGTGGGTTGCCATGCCTTCCTCCAGAGGATCTTCCCAACCCAGAGATCAAATGGCATCTCCTGCATTGCCGGTGGATTCTTTACTGCTGAGCTACCCGGAAGCCCATTAAATATATCCGTATATTACAACAGTAATAATTGAAACTCACAGTCATTGGCTCTGGATCTGGATTAAGCACTGTACCAATTGATTTTTTTTTAATTGAGGTGAAATTCACATAGCAGACATTTAACCCATTTAAAAAAATTTATTCTTTATTTTTTGGCTGTGCTGGGCATCACATGGGATCTTAGTTCCCTGACCAGAGTTTGAACCTGTGCCCCACTGCACTGGAAGCACAGAGTCTTAACCACTGGACTGCCAGGGAAGCCACAATTAACCCATTTTAAAGTGAAGAATCCTGCGGCATTTAGTACATTCACGGTGTTGTGCACGCCAGCACCTCTGTCTAGCTCCAGAACAGTTTCATCACCCCAAAAGGAGATCCCGTCCCCATCAGCGGTCACACCCTATCCACCCTCCCCCAGCCCTTGGTAACCACTGATCTGCCCATGGTTTTAGACAGTTCATATAAACGGAATCCTAAGAGATGAGGATTTGATTTCCGTTTTGAGCCTAGCCCACAAGCATTCTGACCCCAACTCTGTTGTGCCCTGGATGGTCACTTGGTCTTATGTCCCTCTTGGTCTGTGTCGCCAAGCCTAGAGAGAGGACTGACTTCCCCAGGGCTATGCAACAGTGGTGTTGGGCCAGTGGCTTCTGGAGCCACATATCCACTTCCCCACTGTGGGTCTGGGCGTTGTCTGTTGCCTAG
Seq C2 exon
GAAACAGGCCTGGTGGTGATGACGGACCTGGTGAGCCTAAACCACCGGCAGGACGGCGGCTTGTACACTGATGAGGCTGTCCCCGCCTTCCAGCCCCACACAGGGAGCCTGATGGCAGCCGTGTCCTCCAGACAGCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331:ENSBTAT00000047290:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCGGGAATTGGAAGATT
R:
GGGGGCTGTCTGGAGGAC
Band lengths:
302-2200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]