HsaINT0040526 @ hg19
Intron Retention
Gene
ENSG00000160111 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:23228]
Coordinates
chr19:17081701-17086068:-
Coord C1 exon
chr19:17085907-17086068
Coord A exon
chr19:17081844-17085906
Coord C2 exon
chr19:17081701-17081843
Length
4063 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGG
5' ss Score
6.08
3' ss Seq
GGGTGTTGTCTGTTGCCTAGGAA
3' ss Score
5.51
Exon sequences
Seq C1 exon
GTTTTCCAGGAACTGGAAGATTATGATGTTTCTGATTCCTTTGGCGTGTCCAGGGAGGATGGTCCTTTTTGGTGGGCTGGGCTGACGGCACAACGACGCCGGCGCTCCTCTGTCTTCCCGTGGCCTTGGGGCATCACCAAGGACTCTGGGTTTGCCTTCACC
Seq A exon
GTAAGGAGAGGTGGTCTCAGATCCCTCTGCCCCCTTCTAAGTTCCTCTTGCCTAGAAATAAGAGTCTTGGAGATTCAGAAATGGGTTGGAAACAGAATTGGAAGCTTTTCTTTCTTTTTTTCGAGATGGGGTCTCGCTCTGTGGCCCAGGCTGGAGTGCAGTGGTGTGATCATAGCTCACTGCAGCCTCAAACACCTGTGCTCAAGTGATCCTCCCACCTCAGTCTCCCAAGTAGCTGGCACTACAGGTGCATGCCACCACACCTGGCTAATTTTATTTTGCTTTATTTCTTTGTAGAGATGGGGTCTTGCTACGTGGCCCTGGCTAGTGTCAAACTCCTGGCCTCAAGCAATCCTCCTGCTTCAACTTCCCAAAGTGTTAGGATTACAAGCATGAGCCATTGCACCCAGCCTTCCAAACTTTTCTTTTTCATTTCTCCCCAGTGAAAGCTCACAAGTAGATTCTTCCAATTTGCAAAGCCGTGGAGAGCAGAATGTTATGCATGTCAATGGTCAGGTTCAAATGGGTAACTTGAACTTGTGATGGGACGTGTTATGACATTGACGTGCTTTGCTGCGAGGAAAACCTTCTCATTGGGAGCTGTGGGTGCCAGTAGCTCTTAGCTCTGCCTCGGCTTTGGTTAACTTGGTTGTGTGTCTGGCAGCTTTCAAGCAGAAGGAGGTGGCTGTGATCCCAGGTGGCAGGGGGTCTGAACTGCATAGGTGATCCTCGTGCCCCAGCCTCCCTAGTCGCTGGGATTAGAGGCATGAGCCACTGTGCCCAGCTCCAGTTTACCCATCTTAAAAAGGGCTAAGGGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGGGCTAATGCTGGCTGAGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACAAGGTCAAGAGATCGAGACCATCCTGGCCAACACGGTGAAACCCCCTCTCTACTAAAAACACAATAATTAGCTGGGCGTGGTGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCAGGAGAATCACTTGAGCCCGGGAGGTGGAGGTTGCAGTGAGCAGAGATCACATCACTTCACTCCAGCCTGGTGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGGGCTAATGCTATCAGGTGCCCATCTCTGGACGTTTTCATGATGTGATATAGATAGAAAGGGATTGGGATGGGAGCATGCTTCGCCCTTCAGGGTCACACCTTAGGGTGCTGGTGGTCTCCACTCAAATGCGTGTCCCATTGGAGGGTGCCTTTCATTTCAGCTTTAAAAAATATTTCTGGCCAGGTGTGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACACGTGGATCACCTGAAGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTATCTGGGTGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTAAGGCAGGAGAAGCTCTGGAACTGGGAGGCGGAGGTTACAGTGATCACGCCACTGCACTCCAGCCTGGGTGGTAGAGCGAGACTCTGTCTCAAAAAAATGAAATTAAATAAATAAATAAAATTTCAAAGGCATCCTTCCCTCCCCAACCTGTGTTGCTTTTATGATGAAAATTTCCAAACATGCAGAAAAGTTGAGCGAATTAGACAAATACCCACATGCCTGCCACCTAGTTCCCACAGTTCTATTTGCTAAAAACAAAACAAACAAACAAAAAAATCTCTTATTTTTCTTTTTTTGAGACAAGATCTCACTTTGTCACCCAGGCTGGTATGCAGTGGCGTGATCTCAGCTCACTTCAGTCTCGACCTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGACACACGCCATCATGCCTCGCTAATTTTTTTCGTATTTATAGAGATGGGGTTTCACCATGTCACCCAGGCTAGTCTTGAACTCCTGGGCTTAATGGATCCACCCGCGTTAGCCTCCCGAAGTGCTGGGATTACAGACATACACCACTGTACCTGGCAAAATAAACCTTTGTGTTTTGTTTTTTGTTTTGAAAAATAACATTTCATTTATGAGTATGTGAACTGCCTGGCAGTTTGAACTCCAGGTCCCTTCTGGAAGTCAGAGGTGACGCCTTTGAGTCAAAGGAACTGGGTTTGAATTTCTTATTCAAAGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCAGTAGTCCCAGCTACTCAGGAGAATGAGGCAGGAGAGAATGGCATGAACCTGGGAGGCGGAGCTTACAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTAAAAAAAAAAAATTCTTGTTCACAAATCCAAGTCAGCCCAGGCTACAGTGAGTCTTCTTTCAAATCCAGTTGCTCCCAGTAATTAGTACAATGATGAGGACAGAATAAAAAGACTAATTGCATAGCCGGGCATGGTGGTGCACTCCTCTAGTCCCAGCTACTCAAGAGGCTGAGGTGGGAGGATCACTTGAGCCTGGGAGTTTGAGGCTGCAGTGAGCTATGATTGCAGCACTGCACCCCAGCCTGAACCACAGATGGAGGCCGTCTCTAATAATACTAATACTAATAAAAGAGATCATTGCATCCCACCGTTGGTCCTTGGTTGGGGTCAGGTACTGCGCCAACTGATTTCCTCCCCTGCTCTCCCCTCACTTCCCCTTCCTTCTTTTCTTTTCTTTTTCTTTTGAGATGGAGTCTTGCTCTATTGCCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCCAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCATGCCTGGCTAATTCTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGCTGGTGTTGAACTCCTGATCTCAAGTGATCCGCCCACCTCGGCCTCCCAAAATGCTGGGATTACAGGCATGTGCCACTATGCCTGGCCATGATTTTTCTAATCGAGATGAAATTCATATAACATAAAACTCACCGTTTAAAATTCAGTGGCATTTATTATATTCACAGTGCTGTGCAACCACCACCCCTACTTAATTCCAGACCATTTTCATCCCCCAAAAGGAAACCCCATCCCCAGTAGCAATTACTCCCCATTTCCCCTCCCTCAGCCCCTGGCAGTCACCAGTTGATCTGCTTTCTGTCTCTATGGATTTGCCTGTTCTGGGCGTTTCATCTCAACGGAATCATACAACATATGGCCTTTTGTGTTTGGACCATCTGATTTGGTTGCACAGTTCAAATGTGCTGTTCTCTCTTCTCCACCCTGGATGGTCACTGGGTCCCACGTTCTCCCCAGCCTGTGCCACCAAACCCAGAGTAAAAGAATGATGCCCCATGGTGACGGGCACCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGATAGGCGTGAACCTGGGAGGTGGAGCTTCCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAACAAACAAACAAAACAAAACAAAACAAACCCAAAAAAGCAAAAAAAGAATGATGCCCCCAAGGTTGCCACAAGCTGATATTGGGACAGTGGCCACAGGGTGATTCATTCCCTTATGCTTCTGGGGGCTGTCAGCATCCACTTCCCCACCAATGGTTTGGGTGTTGTCTGTTGCCTAG
Seq C2 exon
GAAACGGGACTGGTGGTGATGACCGACCGAGTGAGCCTGAACCACCGGCAGGACGGTGGCCTCTACACCGATGAGGCTGTCCCCGCTTTCCAGCCCCACACAGGGAGCCTGGTGGCAGTGGCTCCTTCCAGGCACCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160111-CPAMD8:NM_015692:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.249
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)